Array 1 581904-583335 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGHF010000002.1 Escherichia coli strain PLATE2_D3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 581904 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 581965 29 100.0 32 ............................. GATATACCATGTCATACAACCGACCGTAGCCA 582026 29 100.0 32 ............................. GTTATCTATTGTAGAGGGTGAAGGTTACAGCC 582087 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 582148 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 582209 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 582270 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 582331 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 582392 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 582453 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 582514 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 582575 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 582636 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 582697 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 582758 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 582819 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 582880 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 582941 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 583002 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 583063 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 583124 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 583185 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 583246 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 583307 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 598837-599657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGHF010000002.1 Escherichia coli strain PLATE2_D3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 598837 29 100.0 32 ............................. CGTCGATTCATCGCCCCCGGTGGAGTGAAGCA 598898 29 100.0 32 ............................. CAAACGATGAGCGGGCCAACGAATCGCCGTTG 598959 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 599020 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 599081 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 599142 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 599203 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 599264 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 599325 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 599386 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 599446 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 599507 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 599568 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 599629 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //