Array 1 1490-119 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJV01000016.1 Micrococcus luteus strain UMB0867 .16933_8_10.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1489 29 100.0 32 ............................. TCGACCGCCCTGGTGTCTGCTGCTAAGCGGGC 1428 29 100.0 32 ............................. CGACAACATTGCTGGGCGAAATGCCCAGAGCC 1367 29 100.0 32 ............................. AGAGGCCGAGGCGAACAACGAGACCACCCCGA 1306 29 100.0 32 ............................. ATCACCGCCATCGCCACCCTGCGCGAGGCGTT 1245 29 100.0 32 ............................. CACGGGTGCAGCGGGATGTGCTCCAGCGGGAG 1184 29 100.0 32 ............................. CGGAGGGCGGGTGCTGTGACGGACTGGCACCA 1123 29 100.0 32 ............................. ACGTGGAGCCAGGCACAGTCGGGCTGGACAAC 1062 29 96.6 32 ............................G TGGGTGTAACGCTGGTTCATTGCCATGGTGGT 1001 29 100.0 32 ............................. GTGTCGATCTCCGAGCCGGTGATCGAGTACAC 940 29 100.0 32 ............................. GTGGCGCAGACAAGAGGGACTCGGCCACCCGG 879 29 100.0 32 ............................. CCGTCCGGGCCGTGCGAGATCCGCACCGTGTC 818 29 100.0 32 ............................. GTGACCGCACCCGCCGGCCAGGGCATCAACCC 757 29 100.0 32 ............................. GAATGCCGGCCTGATGATCGAGGGCGGCGGGG 696 29 100.0 32 ............................. TGCTCGGCCGCAGACTCGGCGTCCATGGTGGC 635 29 100.0 32 ............................. ATGCTGTTCGGCGCGTCGGAGTCCGCGAAGTC 574 29 100.0 32 ............................. TGCAAGGTGTTCCGCACGGGAGCGTTCGTGAA 513 29 100.0 32 ............................. AGAAAGGACGCTTACCATGAGTTATGCAGTCA 452 29 100.0 32 ............................. GGGGCGATGACGCCATGCGGGCCCGTGATGAG 391 29 100.0 32 ............................. ACGGCCCTCCCGCCGGCCTCCGAGCTGACCGA 330 29 100.0 32 ............................. GTTCCGGCCACGCGACTCCTTATAGATGAGCG 269 29 96.6 32 ............................T GACGGGTATGCGCCGGAGGAGACGGTGACTGT 208 29 100.0 32 ............................. ATGAACCGCTTCACCCGTGCCACTGGTGGCGA 147 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : TCGCTATGGGGCGGCCGAGGGGGCCAGGTTGTCCCGGGCGGCGTGAGCTATGGGGACGAATTGTGATGGTGCTCGTTCTGACAGCTGCCCCAGCAGGGCTGCGAGGCGAACTGACTCGGTGGCTGATGGAAGTCGATGCGGGCGTTTTCGTGGGGAACCCCTCTGCCCGCATCCGGGAGGAGCTCTGGAAGAAGACCAGAGAATCAATCAAAGAAGGTCGTGCGTTGTTGATCTACTCGGCGGCCACGGAGCAACGGCTCCGCGTTGAGACGCACCGCCACCACTGGCGTCCAGTTGACGTGGAGGGCCTCACCTTGATGAGACGTCCACTGCCGGACGGCCCGCCCTCCATGGAGGCCCAGAGACGGACTGGATGGAGTGTTGCCCGTCGAGGGCAGCGTGCGTTGCGACCGTCGTGGCGACGAGATCAACACCGCGAAAGTGAATGATTCGTCTGGGCTGATGAGTCAGTAGGCTAGTGATTGGGCCAATTCTCAAGT # Right flank : CCGTGAAGCGCCCCGGGTTCGGTGGGGGCTCTCAACTCACGGAGGATGAGAGTCATGGCAGCACCGAAGAAGTACCCGGATGAGTTGCGTGAGCGCGCGACGCGGCTCGCGGTCGAGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 113-764 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJV01000018.1 Micrococcus luteus strain UMB0867 .16933_8_10.18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 113 29 89.7 32 A.T.A........................ GCGGCTGCCACGGGTCAGGTGCCGGCGCGTCC 174 29 100.0 32 ............................. GGCATGAACCCCAGGGGCAGGGCCAGCAGCGC 235 29 100.0 32 ............................. AGCCCGGGCGTGTCTGGGTGGTTGCGGGCGGC 296 29 96.6 32 ....................A........ GGCTTCCAGGTCCGCACCGACCCCACCGGCGT 357 29 96.6 32 ............................G GGCACCCCACCGAGGGCCACCACGTCGTACAG 418 29 100.0 32 ............................. TTGCGGTCCGCGGCCATCAAGGCGCCGGCGGC 479 29 100.0 32 ............................. ACCTCGTGGTCCTGCCGGGCGGGTCCGAGGAC 540 29 100.0 32 ............................. ACCTCGTGGTCCTGCCGGGCGGGTCCGAGGAC 601 29 93.1 32 ...........................TG GTATGCGGGAACGTTCGACCTGATCGCCACGC 662 29 89.7 45 ...................AT...T.... GGCCTGTTGACCGGTGCCGGCGCCAGCTGCCACAGCCTGGATGGC 736 28 65.5 0 ..........A...-...CTCCACCA... | A [744] ========== ====== ====== ====== ============================= ============================================= ================== 11 29 93.7 33 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GCCGAGTTCGCGGCCGCCCACTGGGCATCCCACAAGCCCGTCAGCTACGTTGGAGAACAGGTTCCCGTCGGAGCCGGTTCCAGATAACCGAGCCTCCACGAAACCCGGGGCGA # Right flank : CCACTCCTCAGCTCTCCGCCTGGCCCTCCCGCCAGTAGCCCATGAAGGAGACGTGTTTCTTCGGCACGCCGCCGGGGCCCACGCTGAGCCGGCGCAGGGCGCGCACCATCGCGGACTCCCCGGCGAGGAACACGTAGGCCTCGGGCCGTTCGTCGGCCTCGAGGGCGGCGACGGTCCACTCGCGATCGGCGGAGGCCGCGGGCGGCGCGACCGGCCCGCCGGCGTCGTCGGGGTCCACGCCCAGCAGGGCGGCGAGGCGGGCGTGCGCCCAGGACCCCGACGGCGCCCCCGGCGCCCGGCGGCCCACGTGCAGGCGCACGCGGCCCCGGTCCGCCAGCTCCGTCACGGCTCGCCAGTCCCACGGCTCGGGGACGGCCAGGCGCTCGGCGATGAGGTCGGGGGCCTGCCCGTCGTGGGGCAGCTCGAGCACGAGATCCGCCTCGCCGTCGAACCCGCCGAAGGGGTCCGCGAGCTCCTCCGCCACGGACACCAGGGCGGGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //