Array 1 37369-37816 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUQE01000038.1 Pseudomonas aeruginosa strain GER_MD14_1510_Pae_083 PA-BIM083-S9-VE-DEU-2015-033-PK_S25_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37369 28 100.0 32 ............................ GAGGGCTCAGGAGGCAGGGACGGAAGAGCTGT 37429 28 100.0 32 ............................ TCCAGGTACTCAGCGGCGTCGGCCACCACCAG 37489 28 100.0 32 ............................ AGGTCGACCGCGATGTGGCGGCGTTGCAGCGC 37549 28 100.0 32 ............................ TGACGGCGCCTGGGCTACGGTGCTCCAGGGGC 37609 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 37669 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 37729 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 37789 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48100-46691 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUQE01000038.1 Pseudomonas aeruginosa strain GER_MD14_1510_Pae_083 PA-BIM083-S9-VE-DEU-2015-033-PK_S25_121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48099 28 100.0 32 ............................ GTGATCATTCCTTTGAGCCGAATTCCTCCCTG 48039 28 100.0 32 ............................ ATTTCCCGAATCCTTAACGGCAAGATCGCCAC 47979 28 100.0 32 ............................ AACTGCGCTTGGCTAGCACGGGTTTTCTGCCA 47919 28 100.0 32 ............................ ACCACGCTCAGTGTCGCTGAGTTCGGCGACTA 47859 28 100.0 32 ............................ TTGCGGAGTAAATCGACTGGTGCGCGCTTCAT 47799 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 47739 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 47679 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 47619 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 47559 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 47499 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 47439 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 47379 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 47319 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 47259 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 47199 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 47139 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 47079 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 47019 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 46959 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 46899 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 46839 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 46779 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 46718 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 339-1325 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUQE01000009.1 Pseudomonas aeruginosa strain GER_MD14_1510_Pae_083 PA-BIM083-S9-VE-DEU-2015-033-PK_S25_92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 339 28 100.0 32 ............................ GTACCGAGTCGCAAACCGTTCGCCGGGCCTTC 399 28 100.0 32 ............................ ACTCCTTCGGTCGCTTCATCGACCTCCACGGT 459 28 100.0 32 ............................ GGCAAGCCCGGCCGCGTTGCGCAGAAGCAGCA 519 28 100.0 32 ............................ ATAGCTGCTCCTGTTCTGGTCGAAGCGCTGGT 579 28 100.0 33 ............................ ATCAGCGCTACCATGACCGCGTGACGGCCTACT 640 28 100.0 32 ............................ TGGTGCTGCGCAAAGACGAGATCACCCCGGGC 700 28 100.0 30 ............................ TTGCCACCACCACACGCGGTGGAGCAGCTG 758 28 100.0 32 ............................ TCATTGCAGTAGCGTAAATATATCTGGAGGAC 818 28 100.0 32 ............................ ACGGTCTGCCCGCTGGAACTGTTGAACCAGAG 878 28 100.0 32 ............................ AGGACGGGTCGCCTTGGAATCCGGGCGCTCAG 938 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 998 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 1058 28 100.0 32 ............................ TGATCGCGGTAGCGTGGTCCGATCACCTGGGC 1118 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 1178 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 1238 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1298 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 142948-144635 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUQE01000016.1 Pseudomonas aeruginosa strain GER_MD14_1510_Pae_083 PA-BIM083-S9-VE-DEU-2015-033-PK_S25_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 142948 30 100.0 37 .............................. GTGGCGTCGGCTCGCACGGCCCGGACTACCTGTCAGT 143015 30 100.0 39 .............................. GGATAGAGTAGGTGCGTAGTCAGTTCGCCCCAGGTAAGT 143084 30 100.0 36 .............................. GCTGACCGTTGGCGAGGGCTTCAACTTCGAGGGCGT 143150 30 100.0 35 .............................. CGGTCATGTTGCGGAGCGCGGTGAGCACCTGGAGT 143215 30 100.0 38 .............................. TCCGATACAGGGCATGCAGGGAATGGCCCGCGCCAGGT 143283 30 100.0 36 .............................. TACAACCCGCGGGTGTTGCTCATTGCTGTCATTCGT 143349 30 100.0 37 .............................. AGGCCGTAGCGGTCCTGGTAGCTCTGCATCAGCATGT 143416 30 100.0 37 .............................. CCCTCGTACTGGGTGCGGAGCCAGGTAAGGATGAAGT 143483 30 100.0 35 .............................. GTGGAACTCGGTTTGCCTTGCAGTGATACCGGCGT 143548 30 100.0 36 .............................. AAAGCGGCCTATGAGTACGCCGCCACCAAGCAGGGT 143614 30 100.0 35 .............................. ATGACGCCCTCGACGAGAGCGATGGAGACCGTTGT 143679 30 100.0 36 .............................. CACCGGCTCCCACTTCACTTTAACGCCTGCGTGTGT 143745 30 100.0 36 .............................. TTGCCGCAAGACAAAATGACGGAATTCTCCCGCCGT 143811 30 100.0 37 .............................. GATGAGCCCAATGTGTAGGAGGGTGAATGCCGTACGT 143878 30 100.0 36 .............................. TCCATGGAGCGGCAGATGATCGTCGTGCGGTAGGGT 143944 30 100.0 35 .............................. ACAAGGACGCCCAAAGCATTGTCGAGCATTTTAGT 144009 30 100.0 37 .............................. GCCACTGGTAACCAAGTTGAGGTTCAGGCGAACATGT 144076 30 100.0 36 .............................. CACTACGCCGAGATGGTCCGGCGGTGGGCAAACAGT 144142 30 100.0 36 .............................. TGCACCGAGTTACCGGCCTGCGCGTTCCACGCCAGT 144208 30 100.0 36 .............................. TCTTTGCGGACATAGTTGTAGGCGCCGGCGAGTGGT 144274 30 100.0 37 .............................. GCCACCTGCACCCGCCAGCCCAGCCTGGGCGGCATGT 144341 30 100.0 36 .............................. AACGCGGGCGCGTGGGCGACGGTGGTCATGTGGCGT 144407 30 96.7 36 ..........T................... AACCGCTCCACGGCTGGGGTGCGCCTGGAAATGCGT 144473 30 100.0 36 .............................. CAAAGCTGGACCCTGGCGCGGATCTGCATGTCTCGT 144539 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 144606 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.2 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGTGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGATAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGTGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //