Array 1 744476-744871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZH010000001.1 Rhizobium daejeonense strain CCBAU10050 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 744476 29 100.0 32 ............................. AGGCTGAGGCTGTCTTTGATACCTATCTGGCC 744537 29 100.0 32 ............................. TGCGGGAGTATGTGGCTACCTCAGATGCCCGC 744598 29 100.0 32 ............................. GCGTTTATCGCAAAGGGTCCGAGACTGACGAA 744659 29 100.0 32 ............................. TGGCACGTCGGCGGTTTCGAAGTCGTGCGTGT 744720 29 100.0 32 ............................. ATTGATGCCCTCCCCGCGAACATGACGACGAA 744781 29 100.0 33 ............................. AAATTGCTGCGGCGAACCGGTTCAACGAGCTGC 744843 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : ACCGTTCGTCTCGCTCGGCGCTCCGGCGGCTTGCTGGTGCCGGCGGTCAGGCGTGATGGAGCGGGTGTGGGGCTCGACTGGGCGCTGAGCGAGCTTTCCGTCCGGAAGCGCTGGCTGCTTGCCGGGGCCGCGATACTCGATGGTGGCGGCCTGCCGGCTCCGCGCGATCCGGCGGCACGAGACGCGGCGCGCGGCCTCTGGCCTGAATGGGAACGGACGATCGCTCTTTATGAAGTCGATTCGGACGGATCTCTTGCGACCGCACAGGACATGGGCCTTTTCTACGATGGCGTCGGCGGTTTGCGAAGGCAGTCTGTGTCCGGGGCGTGAACTCGACGAGGGGGCGCCGTTCAGGGCTCATTTCAGCAGCCTTCGTAGGCCAAAACCTCCACTTTTTTCCGCCTGCCCATGCCCGTCTAAAGGGCCCGAAAAACGATCCCAAAATCGGTACTTGTCAAATCGTCTGGATTTCCTAATAATTTCAGCGGCTTTCAGGAAGA # Right flank : GCAACAGCGCCGCCTTGCAGGGCGGCGCGTCTAGTGTTCCCCACACGTGCGGAGTGCCCGCGGCATGGGGATTGTGTCATTCCCGAAATTGTCTTATTTATACTTCAATAATAATAGGAATATCAAAACATGAACCAGAGCGAGGCCCTTGCCGTTTTTGCAGCTCTTTCCCAGGAGACGCGGCTGAGGATCGTGCGCACGCTCGTCGTTGCCGGACCCGTAGGGATGGCTGCAGGGGCGCTGGCGGAACAGGTTGAGGTTTCACCATCCAACATGTCCTTCCATCTGAAGGAACTGGAGCGGGCGGGTCTCGTTACGCAGCAACGCGATTCGCGCTCGATCATTTATCGCGCAAGTGGCGAGAGACTCGGCGATCTCCTTCGTTTCCTGATGGAGGATTGCTGCGGCGGCAGGGCAGAGATATGCGCCCCGGCGTTTGCCATGGCGCAATGCTGTGGGCCGGTAAAGGGCGGCGTGAAATGACCTTCGATCTTCCACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 753049-753260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZH010000001.1 Rhizobium daejeonense strain CCBAU10050 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 753049 29 100.0 32 ............................. TCGGCAATCGCTGCCTCGTTCTCCGTCTCCAA 753110 29 100.0 32 ............................. CGACGTTCGCCGAGTTCATCGAGGATCACATC 753171 29 100.0 32 ............................. CTTTTCGCAGACCGTTCTGGAGCCGAGCGTGG 753232 29 86.2 0 ......................G..G.GT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : GGCCGGAGGCGCCGGAGGATGCCGTTGGCCCCGCCTTCGAGGACCCTGCTCCCTCCGGAGACGAGGGGCAGCGCGGATGATGGTCGTCGTCACCAACAATGCTCCACCGCGCCTGCGCGGCCGGCTCGCCGTCTGGCTGCTGGAGGTCAGGGCCGGCGTCTATATCGGGGTCTATTCTGCCCGGACAAGGGAAATGATCCGCGGGCAGGTGGAGAGCCTGATCGAAGACGGCGACGTCGTGATCGCCTGGGCGGCTCCGACCGATGCCGGGTTCGACTTCGAGACCTTCGGCCGCAACCGCCGCGAACCGGTCGATTTCGACGGCCTGAAACTCGTCGCCTTCAAGCCTCTGGAAAATTGATCGAGCGACGTTTCATTCATTGTCCGGCGCATTTTTCAGTCGTTCCGAAGGCCGGAAAAATCAGCTGGTTTTCGTTGAAAAAATCGGTAGGATTTGCGGAGGTGGAATTTTCCTTATATTTCATCGGCTTCTGGGAAGA # Right flank : TTTGTCTTCCCGTCCCTCTTGGCCTATTCTGACGGTGGTGACGCGCGGAGCAGGAAGCACGCCCTTCAAGGCGATCGGGATCAGGCGATTCCGGCCCCCCCGGTGCGTTACAACCCATTCAGCAACCTTGCGGTTCTTCCCAGCTTGTTATCGTGCCGATAGCGGCTCTTGCTGCCAGTTTCCCATTCAAAGCTCGTGAATACGCACTCCGGGCACGACGTCGCGGGCGATGTCGCAGAGATGGCGGTGGTGGGTGAGGTAGATCACCTGACCAAGCCCGGCCATCTGGCCGAACAGTCGGAAGACTTCCTCGGAGCGGGGCTCGTCGAAGGTTTCCATGATATCGTCGGCGACGAAGGGGATGGTTGCGGTGGGGCGGACGGCTGCGAATTCCTCGTAACCGGCGAAACGTAGCGCCAGATAGAGCTGGTAGCGGGTGCCGGTCGACATGGCGTCGGAGAGTTTCGAAGCACCATCCTTGGCCACGCCGATCAGGATTT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 760094-760828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZH010000001.1 Rhizobium daejeonense strain CCBAU10050 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================= ================== 760094 29 100.0 32 ............................. GCGCATCTTCGCGTGCTTCACAGCGACGACGA 760155 29 100.0 32 ............................. GCGTGGAGTCGACAGATGCGGGCCATGGGGAT 760216 29 100.0 32 ............................. GCTGATTTCGTCTTCTACGACCGAATTGCGAA 760277 29 100.0 32 ............................. CGCCGGAGAAGCCGGAAGATCCGTTCGCAACC 760338 29 100.0 32 ............................. GGCTGGGAGCGCCGAGTGAAAGAGGTGCGATC 760399 29 100.0 32 ............................. TGCGCAGCGATGGCGGCCGCGCTCGCCCCAAC 760460 29 100.0 32 ............................. ATGGCAACGGCCTGCCATGGTCCGCCCTTAAA 760521 29 100.0 32 ............................. CGCACCTCGTAGACCTGACCGCTATACGGCTC 760582 29 100.0 189 ............................. CCGCAGCGGCCAAAGAACCAAGGGCTGCCCATGTGTTTCCCGCATGCACGGGAAGTGTCGTATGCAAAATGGAGGATGATACCGGCAGGAGCGCCAGGACAGACACCGCTCCTGTAAAACCTTGGGGTGACAAACTAGCCGAAGGACCGGCAACGGTGGAATATCCATTTAAGGAAGAGACGTCGAGGT 760800 29 72.4 0 A...........C.T.....A.G.CC..C | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================= ================== 10 29 97.2 50 GTGTTCCCCGCATACGCGGGGATGAACCG # Left flank : CCAAGGCGGGGCAGGGTTCGCTGCGCGCGCTTGCCGGCTGCTTCGGCTTTTCCGGCGACGATATCGAAAAGCGCTGCCGCGTGCTCTCGGGCGGCGAGAAGGCGCGGCTGGTGATGGCGATCATGCTGTTCGATCCGCCGAACCTGCTGGTTCTCGACGAGCCGACCAACCACCTCGATCTCGACACCAAGGAAATGCTGATCAAGGCGCTTGCCGACTACGAGGGCACCATGCTCTTCGTCAGCCACGACCGGCATTTTCTCGGCGCGCTGTCGAACCGCGTTCTGGAACTCTCCAACGAGGGCGTTCACCGCTATGACGGCGGTTATACCGAATATGTCGCCCGCACCGGCCACGAGGCACCGGGCGTCGGAGGCTGAGTTTTCCGGGCCGTGACCGGGTGTCGTCATGGCCTGAAAATACCGCTTTTCCGGGCTCAAAAAATCGGTAGACTTTGGCGCGAAGGAATTCGTGAATGATTTCACTGGCTTCCAGGAAGG # Right flank : CTTTCAACCGGGGTAGACGCAAAGCCTGCCTTTCCTGTTATGTCTTGCGACGGGAGATAACAGGAGGACTGCATTCATGAGGGTCAGGGCCGCCATTTTAAGGCAATCGCCGGTCAAGCCGCCGTTTTCGGTGTCGCGGCCGCTTTCCATCGAGACGGTGGAGCTTGCGGGACCGGGGCCGGAGGAACTGCTGGTGCGGATCGGGGCGGCAGGGCTCTGCCACTCCGATCTTTCGGTCATCAACGGCGACCGGCCGCGGCCGACGCCGATGGTGCTCGGGCATGAGGCGGCGGGAACGGTGGAGGCGGTCGGAAGTGGGGTGCACGACATCCGGCCGGGCGACCGGGTGGTGACGACCTTCCTGCCATCCTGCGGGCATTGTCTGCCTTGCGCGGAAGGGCGTTCGGCGCTCTGCATTCCCGGCGCCGAGGCGAATGGCAAGGGGGAATTGCTCGGCGGCGGCTCGCGGCTTTCCTGCGAGGAGGTGCCGCTTTACCATC # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.75, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //