Array 1 4748-4895 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUE01000031.1 Pseudomonas aeruginosa isolate 436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4748 28 100.0 32 ............................ GAAGCGACTTAGCACAACCTCCTCCAAGACTT 4808 28 100.0 32 ............................ ATCCGGTTTGCGTAGACGCGGTTGGCGATGCG 4868 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCTAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCGTCGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGATCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : GTCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTTTCCCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20147-18713 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUE01000025.1 Pseudomonas aeruginosa isolate 436, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20146 29 100.0 32 ............................. GCCCTCGCTCAGCCGTCGACCGCGTCAACGCA 20085 29 100.0 32 ............................. GCGTGTCGGCTACCTGCTTGCTTCTTGGGTGG 20024 29 100.0 32 ............................. GCGTATCAGCGCAGCTCGATGTCGGACGACGA 19963 29 100.0 32 ............................. GACCAGGTCACCGCAGCCTATGAGGGGGAAAT 19902 29 100.0 32 ............................. GCCTCGCTGGATGACTTCGTCCGCACCATGAT 19841 29 100.0 32 ............................. TTGGCGGCTTGGTAGACGATCCCCCATCCCCC 19780 29 100.0 32 ............................. CAAGTACTCGGAAACTAGGAATCCATGGCTAC 19719 29 100.0 32 ............................. TTCTGTTCCCCGACCGCCGTTTGACGGTCGGG 19658 29 100.0 32 ............................. TGCTTGGCCGGCACGGTATCGGCGCAGCCGCG 19597 29 100.0 32 ............................. ATTACGAGCAGAAGCGTATAGCGTGTGCAGCA 19536 29 100.0 33 ............................. CACAGAATGCGCTCGCTTTTACTGAGCAGTGGT A [19514] 19473 29 100.0 32 ............................. TCGAATGGCAGCCAGTCGGGCGAGGGGCCGCC 19412 29 100.0 32 ............................. AGGTGATGCTCAACGACGATAAGCCCGTGATG 19351 29 100.0 32 ............................. GCGGTTTCATCACCAGCGCTACTGTCGGCGAG 19290 29 100.0 32 ............................. ATGCGAGCCTGGGCCGGACCATCCATGTGCTC 19229 29 100.0 32 ............................. TAAAAGGTGCAACACCCCTTCCTAGGCCTGTG 19168 29 100.0 32 ............................. ACGGTGATTGCGTGCCGTTCCATGACCGGAAA 19107 29 100.0 32 ............................. TCCGCGCGCGGAGTACACCTGACGGACCTGGC 19046 29 100.0 32 ............................. TACACAGCCGGGGACTCTGCCGCGAATCGTCA 18985 29 100.0 32 ............................. GGACGATGTCTCGCGTAGCGATCTCGCTCGTC 18924 29 96.6 32 .........................G... CCAACAGGTAGCCAACGCGCCTGGCGATGGTC 18863 29 100.0 32 ............................. AACGCCCTTTCCAACTCATCAGCGCCAGCAGG 18802 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCCG 18741 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGTGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGTCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30326-29319 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRUE01000025.1 Pseudomonas aeruginosa isolate 436, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30325 29 100.0 33 ............................. TTCGGCATTGTGCGCGGTAGCCACGTACCCTGG 30263 29 100.0 32 ............................. CCGAACTGATTGCCGCTGGCCAGGTCCTGGTC 30202 29 100.0 32 ............................. TTGCCTGAGTTCCGCAGCGCGGCGATCAGCGC 30141 29 100.0 32 ............................. GACTTGGCCGGCTTGAAGAGCTACCTGGGCCA 30080 29 100.0 32 ............................. CCGTTGATCAGCAGGCCGGTGTTAGGCCCCAT 30019 29 100.0 32 ............................. ACCTGAAGCGCGAAATCATCCTGTCTGACGTG 29958 29 100.0 32 ............................. GCGTGACGAATTGGCCCGACAGTTCAACAGCG 29897 29 100.0 32 ............................. ACATAGCGAGACCTTGGCCGATCAACGGCATC 29836 29 100.0 32 ............................. CAGATCGAGAATGCCCAGAAGGGCATTGGGCG 29775 29 100.0 32 ............................. CGTGAAGCAGGCGGACCAGATCATGACCGACC 29714 29 100.0 32 ............................. CAGGCGCGCGATTCCGTGGCTGGACTCGGTGA 29653 29 100.0 33 ............................. GTCACGGTGAACGGCAAGGGCCTGGTCACCGGC 29591 29 100.0 32 ............................. CCGCCATGGCCGAGCGTTCGAGGCGCACCGAG 29530 29 100.0 32 ............................. AACCATGCTGGCAGTTCTCTCGACCAGCAGGG 29469 29 100.0 32 ............................. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 29408 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 29347 28 79.3 0 A..........A..C.....-..A....T | C [29338] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTTCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGTTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGAGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGCGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //