Array 1 109343-107971 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUB01000014.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3294 NODE_14_length_178164_cov_0.377564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109342 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 109281 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 109220 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 109159 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 109098 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 109037 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 108976 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 108915 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 108854 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 108793 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 108732 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 108671 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 108610 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 108549 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 108488 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108427 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108366 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 108305 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108244 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 108183 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 108122 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108061 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 108000 29 100.0 0 ............................. | A [107973] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126912-125907 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUB01000014.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3294 NODE_14_length_178164_cov_0.377564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126911 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 126850 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 126789 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 126728 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 126667 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 126606 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 126545 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 126483 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 126422 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 126361 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 126300 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 126239 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 126178 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 126117 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 126056 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 125995 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 125934 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //