Array 1 2323-1685 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMN01000115.1 Thermus scotoductus strain 10_S10 NODE_203_length_2787_cov_65.9598_ID_405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2322 29 100.0 32 ............................. CGCTGGGCCTCACACAAGAAGGCCTCGCCCGT 2261 29 100.0 32 ............................. GGAAGGGGTACATGGGGGCGGTGGTGGCCTGC 2200 29 100.0 32 ............................. AGGCCCCCTGTACCTCCACGGCAACCTTGCGC 2139 29 100.0 32 ............................. ACGCTGAACCAGCTCAGCCCCATCTGAAACAT 2078 29 100.0 31 ............................. GGTAGCCCGGTGCCCAATCCGCAGTTATCGA 2018 29 100.0 33 ............................. CCGCCGCCACGAACCCAGCAGCGAATCCCCACC 1956 29 100.0 31 ............................. ATGGGGAGTCCTGTGGTGTCTCTGAGCTTGC 1896 29 100.0 32 ............................. CTCCGGCGAAGCCTACCGGTATCGGAAAGCGT 1835 29 100.0 32 ............................. AGGGGGTCGCCGTCGTCGACCAGAGGGCCAAC 1774 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 1713 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CTGCGGAGCACCAACCTGATGGAGCGGTTTATCCGGGAGCTACGGCGGGGGACGAAGGTGCGGGACCACAAGTTTCCTAAGGAAGAGGCGGTGTACAAGCTTCTTTACCTGGAGTCGGAGAGGCAGGCTGCTTCGCGAAGCGAACATCTTGCAGGGAGGTGGGCAGAACGGAAACTAAAGGGGTTCTCGGAGGTGAAGGAGGTGCTGGAGAAGATGCTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACCGGGGGTGCTCACGGTTTGGATGCATAGCACCCCCTTTTCTTTCACACCCTAGGGGTCCAGATCAAGTAGCACACGAAGGAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATG # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCTACGTTTCGCGAAAAAGAGACCCTACTGCCCCGCCCTGCAGTTTCTTGGAAATTCATCGGTACTAGAAAGGGCGGAGAAGCCTTTCGGGCACCTACCCCTTCCCCAAGGACTGCGGCCCTCCCTTCAAAAGGAAGGGGTTCCTGCCGGTTATCCGGCAAGAAACCCAGGCGACCCGGGGCCGCTTACCGCCGCCTTCACTTCCGTCCTTCCCCAAGGGCCCATGCCGGTTCTTGAGGAGGACGCCCAGGCTGTAGACCCGCTTTCCCACCTTGACCACGAAGGCTTCCAGCCTGTCGCCCCGCCGCACCACGGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1893-3445 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMN01000166.1 Thermus scotoductus strain 10_S10 NODE_24_length_20404_cov_51.8522_ID_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1893 29 100.0 32 ............................. GACCCAGAGGAACCAGGTGGCCGGATTCATCT 1954 29 100.0 32 ............................. GGCCAGTATACTGGACGGCCTGCACTATCCCC 2015 29 100.0 31 ............................. CGCTCCCGTTCCCGCCCGCTAGCCGCCTCAA 2075 29 100.0 31 ............................. AGTAGGGCAATGGACTGGGTGCAAGCCATTA 2135 29 100.0 32 ............................. CACGGCGTGTTGATGCAGGTCAGGGGCGAATG 2196 29 100.0 31 ............................. CCACGACTTCCAGGTAGTCTACAAGGAGTGC 2256 29 100.0 32 ............................. ACGAGCTCGTCTTCCACCGGGACCCCGAGAAA 2317 29 96.6 32 ............................T TGGAAATAGCATCGAAGACGGCGCTTTGGTTC 2378 29 100.0 32 ............................. CACCCCCCGCAGGTGCGCTGCAGGGCGGCCCG 2439 29 100.0 33 ............................. GCGGGGCCTGGACCACCCACCCCGCCGCCATGC 2501 29 100.0 30 ............................. GAGGGAAGGCGTGGGTAAGCCAAAAATGCC 2560 29 100.0 31 ............................. GAGCCGGATCAGGCTCTTGGCGTAGTCCTCA 2620 29 100.0 33 ............................. CAGGACAGCGAGCCCCGTGAGCATGGCGAGAAC 2682 29 100.0 32 ............................. AGGGGGGTAGGTGAGGGAGGTAGACGCTCACC 2743 29 100.0 33 ............................. GAGCTTCAGGCGGAGTGGGACCCCGGGGAACTC 2805 29 100.0 32 ............................. GGCCCCCAGCACATCCGCCAACGGCTCTCCCC 2866 29 100.0 32 ............................. CTGGGGGAAGTCCAGCCCTACCGGACGGGCCA 2927 29 100.0 32 ............................. ACATAGCCCCTCCTACCCGACAACCCGACAAC 2988 29 100.0 32 ............................. ACCCTGCTTTCCCACTACTACGGGGTCCGGGC 3049 29 100.0 33 ............................. CTGGTGGAGGCCCTCAAGGGGGTGAAGGGGTGA 3111 29 100.0 33 ............................. GGGCGGGCACCCTGTCAGCACTCTTACACGCGA 3173 29 100.0 32 ............................. GGGGGCCGCACCTTCACCCAGGGCGTGGCCCG 3234 29 100.0 32 ............................. GAGGAGGCCCTGAGGCGCTTGGGGCCACCCCC 3295 29 100.0 32 ............................. TAGGGTCTGGGGGGGATGGTGACCTGCCTAGC 3356 29 100.0 32 ............................. CATCGGAGGAGGTGGGATGATGCGCAGGGCAA 3417 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TTCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAGGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGGAGACCTGTGGACCTGGTCATGGAGCATACCCTACGGCCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4327-4781 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMN01000384.1 Thermus scotoductus strain 10_S10 NODE_80_length_9432_cov_32.2026_ID_159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4327 29 100.0 32 ............................. GTGGCCCCTTGGGCCCTGCGGTACCTGGACCT 4388 29 100.0 33 ............................. ACAAACAACGCCCCCCAACGGGACCCGGACGCC 4450 29 100.0 32 ............................. GGGACGGGCTCCTCAGGCTCGAGCCTCGGGTC 4511 29 100.0 32 ............................. GCTTTTGTGGAGCAAATGCTTGTTCGTGGGAA 4572 29 100.0 31 ............................. GCCGCCCCCTGCCTAAATTCCCCGATGGGCA 4632 29 100.0 31 ............................. CTGCCCCACCACGACGTGCGGGATGGCCGGC 4692 29 100.0 32 ............................. GCCCTGGAAGAGGAGGGGGGGTAGTCCAATAC 4753 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTATGACCCGGAGATTCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGTGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1319-919 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMN01000389.1 Thermus scotoductus strain 10_S10 NODE_85_length_8957_cov_15.2909_ID_169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1318 37 97.3 37 ............................A........ CGAGCGTCGTAGGGGATAAACTCTACGTGCGCACGAA 1244 37 100.0 35 ..................................... TTCTCCGCCCCGCGCCGGTTGCGGTAGACCTCGGC 1172 37 100.0 35 ..................................... ATGAGCCGCTTCGCCGCTTGCGTGAACGCCATCTA 1100 37 100.0 35 ..................................... TCCGTCTGGTAGGTAGAGGTCTGGACCGCCTTCAC 1028 37 100.0 36 ..................................... CACGGGGGCCTCGGGCCGGTAGAGGCGTTTGGTCAG 955 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.5 36 CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Left flank : TCCCCCGTCCCCAGGTAGGGGTAGTGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCCTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCTGGGGGAGGCCCCCTTCGCCAGGCGGGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCAGGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGGGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTGACGTGTATCAGTCCTGGGTCCTCGGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTCGCCTGCCTT # Right flank : TCCCCCCCTGACTGGGTCCCTCTGGAAGCCGGTTTTCAAGGTTCCCCGCGCGAACCTGGGTTGAGAGGGCTTCGCCGCGCGCCGTGATTATACCCCTTCCAACGCCAGTAAATCCCTTCCCCAAGGGCCTAACGCCCCCTGCGCGAACCCCCCGGGGTTTGGGCGCCCGCTTGGGGTCCGCGCAGGACGGGCCGGGCCTCCACGTAGACGGGGTAGGGGTCCTTCTGCCGCTTAGGGTGGCCCAGGCGGGGCGACCGCCAGAGGGCCACCTCCGGGGGCCAGGCCCTGGGGTCCTGGAGGGCCAGGGGGGCCTGCAGGAGGAGGGCGCGGAGGGCCTCCAGGGAGACGGGGTGGCCCGGAGTGGGGAGGAGGAGGCTCGGCTGGCCTTCGGGGTCGTGGACCCCCGCGGCCCGCACCCCGTCCGGGGCGGGGTAGAGGAGGAAGAGGGGGACCGCCTCCCAGGCCAGGAGGGTGGCCACGGGGTGGATGCGCACCTTCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 4419-3473 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMN01000057.1 Thermus scotoductus strain 10_S10 NODE_151_length_4762_cov_29.2095_ID_301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4418 29 96.6 32 ............................A GCCTCCCCGCCACCATCACGGACGCGAACGCC 4357 29 100.0 32 ............................. AGCCACAGGCTCAGCCCGCACCGCCTTACCCC 4296 29 96.6 32 ............................T CAAGCGCCCCCAAAACCGGCTGCTGTGCCCCC 4235 29 100.0 32 ............................. CCACCGGGCCCGGCGTAGGGCCCACCGCTTGC 4174 29 100.0 32 ............................. TTCGTAGCTTAGGTCCCTCCCAACTTTGTCCC 4113 29 96.6 32 ............................T TGGTAGCACCCCCGGGGTCATCGGGGTGGTCG 4052 29 96.6 32 ............................A TGGTCAGTTGGTCCGGGACAACCGGCTTTTCC 3991 29 100.0 33 ............................. ACCTTCCCCACGTTTGGCCGTGGCTGGATGCGC 3929 29 100.0 32 ............................. TATCTCCGCTTCCGGCTTGCGGGCGGTTCTAG 3868 29 96.6 32 ............................C GTTGTGGAACGGCCTCTCCCCCCACACCGTGC 3807 29 100.0 31 ............................. GGGGGGCGGTTGTATTGGCTCGGTACAACTC 3747 29 100.0 33 ............................. ATACGCGCGCTCTGAACTCGGGGCTGCCAAACC 3685 29 100.0 33 ............................. CTCATCCGGGGGGAGGTCGTCCCCCTTAATGTC 3623 29 100.0 32 ............................. GCCGCGGCCCCCAGGTAGGTCAGGGCTATGGT 3562 29 100.0 32 ............................. ACCGACGCTACGAGGCGCTGGAGGCCCTCCTC 3501 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : CGTGTGAAGGGGTTTTTGATGCCTCGGCGGCACTACGGGGGGGTTGAGGAGCTTAGGGAGGCGGTGGTTCAGGCCCTCAAGGCCCTGGGGGGTGTGGAGTTGAAAATCTTGGGGGAGGGTACTTAGCTGAAGCAGTCAGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGAGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAG # Right flank : GAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2871-5092 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMN01000009.1 Thermus scotoductus strain 10_S10 NODE_108_length_7075_cov_40.0387_ID_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2871 36 100.0 35 .................................... AAGAAGGCTGTGCCTGTGCTGATCGGGATCCTGGG 2942 36 100.0 34 .................................... TAGCCCCACCCCCTGCTCCCGGGGGAAGAAGGCC 3012 36 100.0 36 .................................... AGGAGGCCCTCCGCCGGGTCCACGGCCAAGAGGCGG 3084 36 100.0 39 .................................... AGGGCTTCCCCGGAGGGCGTGGTCCAGGGCCACGGCCAA 3159 36 100.0 36 .................................... TCGTGGAAGCGCTTGAGGTCCTCTACCCCGCCCGCG 3231 36 100.0 37 .................................... TCCGAAGACGCTAACGTGGTCCGTCCTGATGACCGCC 3304 36 100.0 37 .................................... TTCCAAAGCCCGATCCACCTTGTCGGGCCGCTTCTTG 3377 36 100.0 38 .................................... TCCACATCGGGGGCTCCCCGGGGCGGGGAGGGTGGAAG 3451 36 100.0 39 .................................... GCGCCAACGGCTCCACCGGGTACACCTTCAGCGTGGTGC 3526 36 100.0 35 .................................... GTAGCGCAACCAGGCCTTCAACCCCTCCCAATGGC 3597 36 100.0 42 .................................... AGGGAAAGCTGGCGGCGGGTCACTCTGATGCAGACGAACCGG 3675 36 100.0 40 .................................... GCGGTCTTCCTCACCTCGGGCACCTCCATGGCTAGGATAG 3751 36 100.0 36 .................................... CTCCTGGACCACGGGGACATGCACCTGGACCTCCGC 3823 36 100.0 36 .................................... CCATCATGCCGCCAGGTGGCCGGTCCCGAGCCGGTT 3895 36 100.0 37 .................................... GAGTAGGGCCGGTAGAGGAGGAGGCCCGGGTCGTTGG 3968 36 100.0 37 .................................... GGGCTCCCAGTACCGCTCGCCGTATGCCGTCGCGCGC 4041 36 100.0 35 .................................... GCCCTGGAGGTGGTGGGCAAGACTAAAAACGCCTT 4112 36 100.0 39 .................................... GCCCAGCACTCGGTGCCTGCCCATCTCGTCCGGGGTGGG 4187 36 100.0 39 .................................... CCTGCTCCTCGGATTCCGGAGCTTCCGCGGGTTCCTGCG 4262 36 100.0 35 .................................... AGCCGCGCCTCGTAGACGGGCTCCACCCGCGTGCC 4333 36 100.0 36 .................................... AGAACCCTTCGGATGCTTATCATCGCTCACCTCCTG 4405 36 100.0 37 .................................... TAGCGTGCCCACGATTGAGGAGCTTTTGGACTTTTTA 4478 36 100.0 38 .................................... AAGGTCAAAATCACCCGCGACGGGGCGAACCTGGCCGC 4552 36 100.0 37 .................................... CGGGTCGCCGTAGACCGCTGCAAGCCCGCCCTTGCCC 4625 36 100.0 38 .................................... AAGGTCAAAATCACCCGCGACGGGGCGAACCTGGCCGC 4699 36 100.0 37 .................................... CGGGTCGCCGTAGACCGCTGCAAGCCCGCCCTTGCCC 4772 36 100.0 35 .................................... CTTGAGAAGAGGAGATAGTAGATCCCCCCATCCTC 4843 36 100.0 36 .................................... TCTGCGTCTAGGCTGTTGAAAGCGCTGACCGCGATG 4915 36 100.0 39 .................................... CACAGGGGTTGATGAGATTGTGGACGGCGCGGGAGCCGT 4990 36 100.0 31 .................................... TTACTCATGGCCCCCCCGCCGGGGGCGCCCC 5057 36 72.2 0 CCGAGG....T.................G.A...G. | ========== ====== ====== ====== ==================================== ========================================== ================== 31 36 99.1 37 GTTGCAAAGGCTGATAGCCCCGTAGGGGATTGAAAC # Left flank : TGCGGTGTATTTTCTTCCCCCCGAGGCGGTTCAGCGTACCTGGCGCATTGGCCATCAGGGCATCAAGCGACTCGAGGAGCCGGACATCGTCTAATGCCCACCCCATGCAGGCTTGGAGCCCGCATGGGGGCCCCGGGGTAAAGTCCCTGCAAAGTTTTCTCGGAACTTAGGAGCGCGGGAACCAAAAGCAAAGGGCATAAGGCCCTTTAAGGGGAAGGATCCAGCCCCGGGGAACCCCCGGGTTTGGCTGTCTTTTCACTTGCGCACGCGAAAGCCACCTTTTTTCACAAGCTCTATGCGCATACCGTTTTGTACGATATCCATGGGGCTCAAAAGGCCGATTTCTCATCTTCAAAATGTATATTCGCGTGCGATCACGTCCAGGACGGCATTTTCCTCACATGAGCGCCTCTCATGAACCCCTCCCCCTTGACAAAAAGAAGCCGCGTGCGAAAATGGACCTATGAGCTACCTCCCTAAGCCTATTCTTAGGGGGTAGA # Right flank : CCTTCAGAAGCGGCGGTCTTCTACTAACGGCCCCTGAATTTCTTGGACAAGCTCCACCTCGTCCACCTTGAGGCCAGTGGCCCTCTGGACTGCCTCCATGAGCCCGGGCGGCACCCTCTCCGCCTTCAGGCGGAGGACGAGCTTGTCTGTGCCCTCCAGCTTCCTCTCCACCACCACCTGGAAGCCCTTAGGGTCCAGGCCGAAGCCCGCAAGGATGGGCCCAAGCTCCGTGGGGTAGAGCTTCACCCCCTTGACCTTCACCATGGCGTCTGTCCGGCCGAAGACCCCCCGGGGGAGGAGGGTGAGCCCTCCCCGCCTCTCCGCCACGGCTAGGTCCCCGGTGCGGAAGCGCACCATGGGCATGAGGGTCCGGCTTAGGGCGGTGACCACGAGCTCCCCCTTCTCCCCGTCCGGCACGGGCCTGAGGGTCTCGGGGTCTAAGACCTCGAGGACCGCCATCTCCGGGATCTCCCACAGGCCCTCCTTCTCTAAACCCTCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGGCTGATAGCCCCGTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.80,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //