Array 1 3881513-3883163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM008894.1 Serratia marcescens strain 12TM chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3881513 28 100.0 32 ............................ TGTTCGGGAACAATGCTGCCGATCCGAATCGC 3881573 28 100.0 32 ............................ TTTACAGCGGTGGCGATGCTTCAGCTGGCGAC 3881633 28 100.0 33 ............................ ACGCATGCCCTCGACCTCACGCAGAACCATTTC 3881694 28 100.0 32 ............................ TTCTCGAGCACCAGCTCGGCCAACGTGGCGCT 3881754 28 100.0 32 ............................ ACTCACTGTCGGTGGTGACTGCCGTCGTGCCG 3881814 28 100.0 33 ............................ TTTTACGGGTTTCACATGCATGTTTTTTTACTC 3881875 28 100.0 32 ............................ AGGCCAAGGAGAACAAGAAGAACTCAGACGCG 3881935 28 100.0 32 ............................ TCCATGAATCACTGTGCGGACGCCGTTCCAGC 3881995 28 100.0 33 ............................ CTTAACCTGCTGTAGAGTGAATAGCGGCCGGGA 3882056 28 100.0 32 ............................ AGTCATGAACTCCCATCTCATTCCTAAGCTGT 3882116 28 100.0 32 ............................ TACATCCTTCCCGCCGGAACTCAGCTTGATGT 3882176 28 100.0 32 ............................ TGGGTGATGGTAAGCAGCTTATCGACCGTGGC 3882236 28 100.0 32 ............................ TTATCGGATCTATGGGCTATAGGAGGGGCTAT 3882296 28 100.0 32 ............................ TGCGCCATCACCTCGGCGTACTGTTCCAGATC 3882356 28 100.0 32 ............................ GCGAGCACCATCCCTATGTCTGGTCGGCAATC 3882416 28 100.0 32 ............................ ATTCAGCAGGTAACCCATGAAATATTTCTTCA 3882476 28 100.0 32 ............................ TCGCCACCAGCAAAGGACGGTTGAATGAGGCT 3882536 28 100.0 32 ............................ TGTAAGAAGCGGGAGATATGCAACTGGTGATT 3882596 28 100.0 32 ............................ TCAACCACCACCTGCGGTATCTGGTACCGGAT 3882656 28 100.0 32 ............................ TTGCCGGTGCTGATGCGGCGCACGGGCGCACG 3882716 28 100.0 32 ............................ AGGCAACGAGGTGTCGGTATTGATGAGGCTCA 3882776 28 100.0 32 ............................ ATGCGCGGGTGATCTCGATGGCAACGTGTTCC 3882836 28 100.0 32 ............................ TGATCCAGTTCTTCCAGTGCAGGCAACTCCAC 3882896 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 3882956 28 85.7 31 .........T.C.T........C..... TAGCTGGCGGGTAGTGATTTCGCCGGTATCG 3883015 28 92.9 32 .............T............G. CTGGGCGGCGCGCATGCGTTGGTAGTAGATGA 3883075 28 92.9 33 ..T..A...................... CCGACTGTGGCTACGCCTTGTCGTGACCACTCC 3883136 28 82.1 0 ....................AA..T.GG | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACCGAAAGCGCATTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCTGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCACCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : GAGAAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGACATACATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTTTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3891647-3893175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM008894.1 Serratia marcescens strain 12TM chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3891647 28 100.0 32 ............................ AAGAAAGGGGAAAGATGATGATCGCACCAATT 3891707 28 100.0 32 ............................ TGATGGCTGAATGAAATATCGCCCGTGTAGCA 3891767 28 100.0 32 ............................ ATTTGTATCGCTATCCGAATCAACTTTTCATC 3891827 28 100.0 32 ............................ GCGTGGATCTCTACTGCGAATGGTCTGCTGAC 3891887 28 100.0 32 ............................ CTGTTTGGTCTAGTTCCTGCAAACATCAAGCA 3891947 28 100.0 32 ............................ TGTGGAAGTTGCCGGTAACGCCTTATGTGACG 3892007 28 100.0 32 ............................ ATGGAAAAGGCGATAGCGAAACTCAACAAGGC 3892067 28 100.0 32 ............................ AAGTCCTGATCGGCTACCGGCAGCAAACCCGA 3892127 28 100.0 32 ............................ TCTGCGACGTTGGTGTGTGGAGGTAGCATTTT 3892187 28 100.0 32 ............................ TGCAGAAGCAGACCGACCAGGCCAAGGAGAAC 3892247 28 100.0 32 ............................ GTTGTCGGCGTCGAGAGCATCAACGCGCTCAA 3892307 28 100.0 32 ............................ GCGAGCATGGCGTATACGCCGACCGTGAAGCC 3892367 28 100.0 32 ............................ GCTAATCTGCGGAATGCATAACGGAGCACCAT 3892427 28 100.0 32 ............................ ACTAGCAGCACCACCACTACAAATGAAAAAGC 3892487 28 100.0 32 ............................ ATCCAAGAGCCAACCAGAAGCCTAGACCAGAA 3892547 28 100.0 33 ............................ TACTACATTGCGCTGTTCAAATCGTTGGCTAAG 3892608 28 100.0 32 ............................ AAAGAGCGCCTGGCTGCAAACGGTGTCGAGTT 3892668 28 100.0 32 ............................ AGGAATGCGGCGCGGCTTCTCAAGGAAGTTCT 3892728 28 100.0 32 ............................ GCTCAGAACCTTAACGACTTGCACGCCGCCGT 3892788 28 100.0 32 ............................ GGTGGCATGGGGAATGCGCTACTGGAACAGCG 3892848 28 100.0 32 ............................ ATAAACTCGTTGTCATGCTCGGCACCGTAAAC 3892908 28 100.0 32 ............................ AATGGCAGTTACAGAGCGAAGCTCAGTACCTC 3892968 28 92.9 33 ...........T.C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 3893029 28 92.9 32 ..G........T................ TGCAGCATGTTCAGCGGGCAGCGTGTCAGCAC 3893089 28 96.4 32 ...........T................ CCGCGCTTCGATAGCGGCAAGTGTGGCACCAC 3893149 27 78.6 0 T..........T.C......-..T...T | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGCGCTAACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAAGCTCGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACATTTTCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGTGTTTTTAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTTTCGTTTAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGGTTTGTCTATTTTTCTTTAATAATCAGTTTGTTATAGGCTGTTCTGTTCA # Right flank : TAGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGTTCTCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGCTGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //