Array 1 132959-133174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWY01000032.1 Kitasatospora setae strain NRRL B-16185 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 132959 27 100.0 36 ........................... GACGCCTGGGCCGAGGGCGGCGACGCGCTCGGTGTC 133022 27 100.0 36 ........................... AGCGCCGGCGCCGTGGGCGGCAGCGCCTGGGCCGAG 133085 27 100.0 36 ........................... GACGCCGAGGCGCTGTGCGGCTCCGCGCTGGCGGTC 133148 26 81.5 0 ......A.....T.G..-.A....... | C [133160] ========== ====== ====== ====== =========================== ==================================== ================== 4 27 95.4 36 GGCGGCGACGCGGGCGCGATCGGCGGC # Left flank : GGCGAGCAGGACGAGAGCGGCCGGGGGATGCTGCTGATCAACGAGCTGGCGCACCGCTGGGGCAGCCGGGCGACCAAGGACGGCAAGGTGGTCTGGTTCGAGATGGAACTGCCGGTCCGATCGTCACACTGATTCGGCGTCAACTCCCTTCCCCCGCAAGCCCGTCAACCGCGCGCGTCACCCCGTACGGCATCCGGCGGTACGACGCTCACCCGTCGCGGCGGTGCGTGTGCCCCGGCCGGGTGACCGGTCGGCCCGCAGCGTGCGGTGCGGGCCCGCGGACGCCGATGATCGTCGCGTCCGGCACCAACCCGCGCTCGACGCCCCGGCGATCGGCGCCAAGCTTGGAGAACTCGATGCGTTCCAGCCTTGCCAAGGTCACCACCGCCACCCTCCTCACCGGCCTCGCCCTGCTCGGCAGCGCGGGCACCGCCTCCGCCCACTGCCACCACGTCCACCCGCACGGCGCGCTGGCCGTCGGCGGCGACTCGGCGGCCCAG # Right flank : CGACGCCCTCGCGGTCGGCGGCGACGCCTTCTCCTCGCACTGACACCCCTCCCCCTCCGGCGCGGCGGCAGCGGGGTGACGTACGCGCCGGAGATGCCGCCGGTTCGGCGAACCGGCCGAGCGGGATGTGCACCAGCCGGCGGGCGGCGCGCTCCGGGTCCTTGGCGAACAGCTCGCGCAGCAGCGGGGTGTTGACCGGCCCGGGGCACAGCGCGTTGACCCGGATGCCCTCGCGGGCGAACTCGACGCCCAGCTCCCGGCTCATCGCCAGCACGCCGCCCTTGGAGGCGCTGTAGGAGATCTGCGAGGTCGCCGCGCCCATCACCGCCACGAAGGACGCGGTGTTGATGATCGAGCCCTTGCCCTGCCGCCGCATGTGGCCGATCGCGTACTTGCAGCACAGGTACACCGAGGTCAGGTTGACCTCCTGGACGCGCTTCCACGCCTCCAGGCCGGTGACCAGGATCGAGTCGTCGTCCGGCGGGGAGATGCCCGCGTTG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGACGCGGGCGCGATCGGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 55110-54035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWY01000041.1 Kitasatospora setae strain NRRL B-16185 contig41.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 55109 29 100.0 32 ............................. CGTGCCGATCCGAAAATCATGGTCAGGTCTGC 55048 29 100.0 32 ............................. GCACAAGAGAGGGGCCGGCGGCTACCGGCCCC 54987 29 100.0 32 ............................. CCTGTCGTCAGAACGTGCATACCGTCCAACGG 54926 29 100.0 32 ............................. CGGTCGAACACGCCGTCGGTCTGCGCGCGCCG 54865 29 100.0 32 ............................. CAACTACCAAGCGGGCCACCGCACCCACGCCC 54804 29 100.0 32 ............................. TCAGCGGGCGACTTCCGCCCAGCATGTTGTCA 54743 29 96.6 32 ............................A GTGCAGCAGGCGGTCCGCGGTGCCGGGCGCGA 54682 29 100.0 32 ............................. GGGATCTGCGGGAGGCCGTCTATCCAGGTCTT 54621 29 100.0 32 ............................. GTAGTGATCACGAGGCCGAGCCAGGTGGTCAT 54560 29 100.0 42 ............................. GCGATCCAGCGCATGCTGCGGTCGCCGCCGAGGCCCTGGGCC 54489 29 100.0 32 ............................. GGCATCGGCGGCGCGATGGAGCAGGAGCCCAT 54428 29 96.6 32 ............T................ GGATTGGGTGCGCCCCCCGGTATGCACCACAG 54367 29 100.0 32 ............................. GCGACGCCGCGGGTCCGGATCACCGCGACGTA 54306 29 100.0 32 ............................. GACGCCTACCGCACCGTCGCCGCCCAGCTCCG 54245 29 100.0 32 ............................. CACGTCCGGACGCTGGCGCACTCGACGTACAG 54184 29 100.0 32 ............................. TGCTCCAGCCAGTACGGCAGCCACTCGGAGAG 54123 29 96.6 32 ................T............ ACGCCGACCGCGCCCAGGAGGAGCTGGTCCGC 54062 28 79.3 0 ............TT........-..G.GT | ========== ====== ====== ====== ============================= ========================================== ================== 18 29 98.3 33 GTCCTCCCCGCGCGAGCGGGGGTCTACCG # Left flank : GCTCGCACCCGGCACCGACATCGCCACCCCCGACCCCGACGAGCAACTCGTCGACCTCTGGGACCCGGTCCTCGGAGCCGTCCCCGGCGGCGTCAACTACTCCACCGGAGAAGCACAGTGAACCGCCGCCCTTCGGCAACCGCCGCCAAGGAACCCCCATGGCATCCCTGACCGTCCTGTCGATGACCGCCGTCCCCGACCACCTGCGCGGCGCCCTGACCCGCTGGCTCCTGGAAGTCACACCCCAGCTGTACGTCGGCACCGTCTCCGCCAAGGTCCGCGAAGAACTCTGGTCCTCCGTCAGCAACTGCATCGCCGACGGAGTCGCCGTACTCGTCCACCCCGCCGCGAACGAACAGGGATTCGCGCTGCGGACAGCAGGAACCCAACGACGCCAACCCATCGACTTCGACGGCCTGCTGCTCATCGCCCAAACCCGAGCGACCACACCAGAAGGTCAAGAAATCGCAAAGCCCTAGAGAAGGCGCAGGTCAAAAAGG # Right flank : TGGTGCGTGAGGGTGTGTGGTGCGGAGGGCGGGTCTTTCCCAAGGGGGCGAGTTACTGTCGGACTTCGGTCTCATCATGCTTCTGCCGGGGCGACGAATGTCGCTCCGAGCATCACCGCAGCGGCAGGTGTCTGATCCCGGAGGCCGGGAGGATCCTTGATGGTGCCCATGCCCGAAGGGGTGCTGGTGGGCCTGGGGAATGGCCGGCCGGCCCGCACCCGAGGTTTCAGTGCAACTGGTGGCAATTGCGTTCCTGAACCGTTTGATTGTGATCGCGGTCTGCGAGGGCTGGAGGGCGTAGGCGTCGAGCTTGTTGTGGAGGCCGATGCCGCGGCCCTCCTGGCACAGGTGGAGCAGGTGGCCGCCGGTCTCGGCGATCCGCTGGACGGCCTCGCGCGGCGGCGGGGCGGTGGTCGGGGCGTCCGCGGTGGGCGTGGTCTGCGGTTTGGTGCGAGGGGCCCAGCCGGGTTGTTCACATGCGAACCGGGCTGTGCCCCCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4158-2088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWY01000062.1 Kitasatospora setae strain NRRL B-16185 contig62.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4157 29 96.6 32 ............................T TGACGTGGATTCCATCAGACGTGTGTCGACGT 4096 29 100.0 32 ............................. GGGACGGCCGAGGGGAGGACGTCGTGTCCCTC 4035 29 100.0 32 ............................. GGTCGTGGTGCCGGAGACGGTGATGCTGGGGG 3974 29 100.0 32 ............................. CAGCAGGCGGCCGGAGCCGAGCGCGACGCCTA 3913 29 96.6 32 ............................A CGTGTCCAGCGTAGGCCCAACTGGGTTGTGAT 3852 29 100.0 32 ............................. TGCCGTTGCAGGCGTAGCACGGGGGTTCGTCG 3791 29 100.0 32 ............................. CGGCTGCCGCCGCTGGTGAAGGTGAAGCCGAT 3730 29 96.6 32 ............................G ACCGACATGGCCCGTGAGTTCGCAGTCCGGCA 3669 29 96.6 32 ............................G CAACCGGGGCGGTTGTCGTGACGGAGAAACGT 3608 29 100.0 32 ............................. CGGCCCGGGATCCACGTCGAGGACATCGTGAA 3547 29 100.0 32 ............................. CGGGACAGCGGCGGCCGGGGCTGCGGGCTGCT 3486 29 96.6 32 ............................G TCGGCCGAACACCGCGCGGCCACCGGCAAGGA 3425 29 82.8 5 ........................TGCAG ATGTC Deletion [3392] 3391 29 100.0 26 ............................. CGGGAGCCGCGGCAGGTGCAGATGTC 3336 29 100.0 32 ............................. CGGGAGCCGCGGCAGGAGATGGTCAGCCGGGC 3275 29 96.6 32 ............................G GGTCTCGCGATCCTGGCCAGGATCGGACTCGT 3214 29 100.0 32 ............................. CGGCCCGGGGCGCCCGCCGCCGGGGCGGAGAG 3153 29 96.6 32 ............................T TCTGTCACACAGATGGCATATTCGCGGGGCAT 3092 29 96.6 32 ...............A............. TCGGCGAGGCGGGCGGACGTCATGCGGACGAG 3031 29 100.0 32 ............................. GCGGTGGACAGGCTGACCACGCTGGTGGGTGA 2970 29 96.6 32 ............................G CGGGGCACGACCCCGGCCGAGGACAAGGCGTA 2909 29 96.6 32 ............................T CGCCCGGCGCCACGCTCAAGGACCTGCTGCTG 2848 29 100.0 32 ............................. CGCTGGACCGGGCTCACCGGCGCGCGCCCCGG 2787 29 96.6 32 ............................T TCTGGGCGTGCCGGTCTGCCCGACCCATTCCG 2726 29 96.6 32 ............................T CGGGAGAGTTGGGGCCGGGCGACCGGCTCCCG 2665 29 100.0 32 ............................. CCATCCCCGACGGCCGCGCGCTGTTCCTGGCC 2604 29 93.1 32 ..................A.........G ATCGGCCTCGGCGGGATCGGCGACACCCTGAA 2543 29 96.6 32 ............................A GCGGGCCCGCCCCATCCATCCGGTGGACCGCA 2482 29 100.0 32 ............................. GATGAGGGCCTGGCGCTCAGCCGGGCTACGGG 2421 29 100.0 32 ............................. GGACGAGGGCCCGTGCGGCAACGCCACCCACC 2360 29 96.6 32 ............................T ACGAACCGAGTAGCGTGACCGGGATGCACCAG 2299 29 100.0 32 ............................. ACCGACTTGACGAGGTCGGTCTCGTTGACGTC 2238 29 100.0 32 ............................. CGTGGCCGGCTCTTGTCCGGCATCACCCAGGC 2177 29 96.6 32 ........T.................... ATCTCCTCTTGCTCGTGACGAGTGGTCAGGCC 2116 29 93.1 0 .........................G..G | ========== ====== ====== ====== ============================= ================================ ================== 35 29 97.7 31 CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : CAGCCGCGAGGGTGTACTCGTTCCACCTCAACCCCGCCGCCCGCACCGCAGCAGCCCCGGCCGCGTCCATGAACTGGAAGGCCGGCGTTGCCTTCCCCAAGTCGTGCACACCGCAAAGCCAAACGAACAACAACCGCCCCCGACCCCGCCCACCCGCGATCACGTCCAACCTCCGACGCGTCACCGGCGGCAAGTACTCCTCCCACATCACCTCGGCCACCGCGGCCGTGTCCAACATGTGCGAGATCAGGAGGTTCGCCGTCCCCCCGGCCTTACCCGCCGACTTCCCCCACAACGCCCCTAACCACCCGGCCGCCTCCCCCGAGAGCCCCCACCGACTCACAAGCCCACCCACTCCCTGTGCCTCCGATCCGCTACGCTCCGGAGCGTAGAAGACCCCACTGACAATCCGGCCGCCACCCAGACCATGCGCACATCCCAACCGAGTTCAACTAACAAAAATACTGCCCCCTAACCCACAAAACACCAGCTCATCAAGC # Right flank : CTACCACCATCGACAGTCCCTCCCCTGCGAGTTGATCATTCCTTCTCGAGCCATGGTCCGAATCGGAATACGGAGCCGCTGTTTGCGATTGGTCTCTTCGCACGATCGTACGAAGGGGGACGCTGGGTGAGCGATTTGAAGATGTTCAGGCTCGGGGTGGACAGCCGGGATGTGGAGGTGCGGGGCTCGACGGTGGCGTTGGAGGTGGAGCTGCAGCGGCGGGTGGAGGCCGGGATGGAGCGGATGCTGGGTATCCGGTTCCTGGCGTCGGAGTACCCGACGGGGCCATGGCACCGGGGGCGGGTGGACTCGCTGGGGATGGACGAGAACGGCTCTCCGGTGGTGGTCGAGTTCAAGAAGGGCAGCGACAGCGGGGTCGTGTCGCAGGCGCTGTCGTACCTGACGTGGTTGAAGAGCAGCCGGCTGGAGTTCGAGGCGCTGGTGCGTGCGACTACCGCCGATAGATGACACATACCGACGATGACTATCACCATGATCGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13849-14609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNWY01000062.1 Kitasatospora setae strain NRRL B-16185 contig62.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13849 29 100.0 32 ............................. GGATCCGGGTCGCTGGCCGACCCGGTCGTCAT 13910 29 100.0 32 ............................. CGGGACCGCGAAGTCGTGCTCGCTCTAGTGGG 13971 29 100.0 32 ............................. CTGCTCGCGGAGCTGCGGACCCGCGGCGTGAT 14032 29 100.0 32 ............................. GCCTACGCCGACGCCCAGCACACCCTCGCCGA 14093 29 100.0 32 ............................. TCACCCCCACCGAACTCCTCGCCACCGACGCC 14154 29 96.6 32 ............................T CCAGCCGTGGGTGCCGCAGCAGTTCCACAGCA 14215 29 100.0 32 ............................. CTCGGCGAGGCTGCCGACCTGATCGACACCAG 14276 29 100.0 32 ............................. AGGTTGACCCTGTAGGTCAGGACGCAGTGCTG 14337 29 96.6 32 ............................G CGGCGAACGCGGCGCGCACCGCGTCCAGGTCG 14398 29 96.6 32 ............................T CGGCGTCGCGCCGTCTTCCCCCGGGTTGTCGG 14459 29 100.0 32 ............................. GGACATCTGGGGCGACGACGGGCGGGCGTGGT 14520 29 100.0 32 ............................. GCGCCCTCGTCGTCGGTCAGGCCGTCGACGGC 14581 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : GCCCTCCTCACCCCGGACGGCATCGACCTGGACGACCAGGACGTCAACCAGTTGTGGGACGAGAAGGTCGGCACGGTCCAAGGCGGCGTCAACTGGTCAGCGGAGAGCGCTGGTTCCGTCCTCCGCGCCATCGATCCCGGCATGGGGGACGAGAACGAACACCTGGCGATCATCGGCCCCGAATTCGACAACGACCCGAAGCAGCCCCCGCGATGACCGTCATCGTCCTGATCGCCGCCCCCGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCCACGCCGGCGTCTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGACCTCCTCGCCACCCGCATCGGCACCGGCCAAGCCATCCTCGTCGAACCCGCCACCAACGAACAAGGCTGGACCGTCCGCACCGCCGGCACGGACCGCTGGAAGCCCGTCGACTTCGACGGACTGATTCTCTCCGCCCGCCCGACCCGATAAAACCGCAGC # Right flank : CCCCGCACATGTGTTGCATGGCGATGCTGGCTTGAGCTTGCCCCGCTTTGACAGACACCGTTGGTGTGGTGGTCAGGCCGCGAGGGCGGCCTCGTATTCGGCGGGACTGCGGTAGCCGAGGCTGCTGTGCAGCCTGCGTATGTTGTACCAACCCTCGATCCATTCGAAGATCGCGGTCCGTGCTGCGGCCCTGCTGGGCCAAGGCCGGTCGCCGGGCAACTCCCGCTTCAGCGTGGCGAGGAACGACTCGGCGAGCGCGTTGTCCCAGCACTGGCCGGTGCGGCCGACCGACAGTCGAATACCGAACTCGCTTGCCATGATAGCGAATTCACGGCTGGTGTACTGACAGCCGCGATCCGAGTGGAAGAGCGCTGTTCCGCTCGGGCGGCGGGTTTGGCAGGCGGTCCGTAGCGCGTCGGCGACCAGTTCGGCCCGCAGGTGGTCCGCGGCGGCCCAGCCGACCACGCGACGGGAGGCGATGTCGATGACGGTGGCCAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //