Array 1 65848-60237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFB010000018.1 Vibrio cholerae strain Vc383 NODE_18_length_83154_cov_123.222565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 65847 28 100.0 32 ............................ ACTCGTGAGAAAGCGCATCAACTTCGTAAAGT 65787 28 100.0 32 ............................ TGCGGAGTGTGTTTTGCACTGAACTCGCAACT 65727 28 100.0 32 ............................ TTGCTGCTGGGGAAAGCTATCAAAACCCCATT 65667 28 100.0 32 ............................ TGAAGTACGGCGGCGTGAGTGTCTGGGGATAT 65607 28 100.0 32 ............................ GTAGCCCGTTTTGGTTTTTGGTCTTGCATTTG 65547 28 100.0 33 ............................ CGCTTGCCATTTTTAAAACCAAACGATCCGCAT 65486 28 100.0 32 ............................ AGCTCTATAAATCCTTTTAAGTCGGCTATATC 65426 28 100.0 32 ............................ GCGACAGCAAACGGGATGTTGCATTTGAAGGT 65366 28 100.0 32 ............................ GGCAACAGGAAACCCGCAAATCACCGCAAAAA 65306 28 100.0 32 ............................ CTTTTCGTGCTCAAAGAAGGTAAAACCTTCTT 65246 28 100.0 32 ............................ AACACACCCACTGCGTAACCTTCCATGCGCCA 65186 28 100.0 32 ............................ TAGCGCATCCCAAAACGCGACAGGTGAATCAA 65126 28 100.0 32 ............................ GTCCGGAAACAACCGAGCAATCGCAAGTAAGT 65066 28 100.0 32 ............................ AAAAACAACGGTTAAGGCGGTAACGATAAAAT 65006 28 100.0 32 ............................ AAACTCGCCCCATTTCACCGCATCGTGCGCCA 64946 28 100.0 32 ............................ TTCAATGCCGTCACAGGCAGCATTGCCGATGG 64886 28 100.0 32 ............................ AAGCGCAATCAGCGCACTTGATAGATCGGTTA 64826 28 100.0 32 ............................ AACCCAATGACTTTAGAGGCGTTACCGCTGCA 64766 28 100.0 32 ............................ CCTGACTTTGTTTCGATTATTTTGAGTAATTT 64706 28 100.0 32 ............................ GCGTTTCGCTCAACGTGAGCGAGTGACGCCTC 64646 28 100.0 32 ............................ TCATTACGCACTTGACGACGCCAAACATCAAG 64586 28 100.0 32 ............................ AGAATGTGACGTCTCGGTCCGTACGTTGGGTA 64526 28 100.0 32 ............................ ATCCCGAACGGCTGGCTAGTGCGCATGTCTCG 64466 28 100.0 32 ............................ AGTCTGCGATCTAGCTCCATGCTCTGCTTGAT 64406 28 100.0 32 ............................ TCGAATCTCAACGCCGTCTTTTGTGACGTAAT 64346 28 100.0 32 ............................ ATTCGATCACATTAACCCCCTATCTGCCAATT 64286 28 100.0 32 ............................ GTATGCTTTTAGAGGCGGGTGTTTCGATGGAA 64226 28 100.0 32 ............................ GTGATCACCTTTTTTAATGCTTGATAACAGGG 64166 28 100.0 32 ............................ ATAAAGCTGAGGCGGATGCTGTCTGTGTTTTC 64106 28 100.0 32 ............................ TTACAGAAGGCGGAAGTCAAGAACACCACAGT 64046 28 100.0 32 ............................ AGTACGGATACTCAGGTACGTTTGAAGAGTTT 63986 28 100.0 32 ............................ CAAGGTCAAAACCTGATTGGCGAGCATTACGA 63926 28 100.0 32 ............................ TACTTGAGACGCAGATAGGCTCACTATCATTC 63866 28 100.0 32 ............................ AATCTCACTGGTCATCATGGCTTTTTCTTTGT 63806 28 100.0 32 ............................ CAAAACCTCACCAAAACGCACAGGAAGCATTT 63746 28 100.0 32 ............................ GCGGAAAACACTATCAACAGTAAAGGTACTAA 63686 28 100.0 32 ............................ TGACAATGTGGTGGTATACAAATGACCCAACA 63626 28 100.0 32 ............................ CTACGCTAAATTCACTACGTGGTGAAATGACG 63566 28 100.0 32 ............................ TATTGGGGACGGCTCTCACCGTTCCTCATTAA 63506 28 100.0 32 ............................ TTTCTGTTCTTGTTCAATCAAGGTTTCAGCCA 63446 28 100.0 32 ............................ GTGCGATGAAAACGGCAACGCCTTTCTAAAAA 63386 28 100.0 32 ............................ GCTACTGCATTGATTGCGCCAGCGAGATCCCG 63326 28 100.0 32 ............................ CTTACATCCGCAAAACGCGACCGCTGATGGCG 63266 28 100.0 32 ............................ GCCTTGCAGCGTTCATCAATAAGATGGACGAT 63206 28 100.0 32 ............................ CACTTAGTGCCGGTAGGAACTACTGTAGTGTA 63146 28 100.0 32 ............................ GTTTGAGACTGGCATTGATGCCTTGAATGTAG 63086 28 100.0 32 ............................ AGTAAGCTGGGTGTAAACCTTGTTGTTACCTA 63026 28 100.0 32 ............................ AATCTCACTGGTCATCATGGCTTTTTCTTTGT 62966 28 100.0 32 ............................ TTTCGGCTGTTATCTTACGTTTTGAGCATTCC 62906 28 100.0 34 ............................ CAAGCAAGGAGGACTCGGCTCGTTCCGTTGTCAT 62844 28 100.0 32 ............................ ATCTTGGAGATGATGGAAGCAGGAATAAGCTT 62784 28 100.0 32 ............................ AACGTAGCCGCATGGCTAATGGATAACGATAC 62724 28 100.0 32 ............................ ATGAGCTTATCCCCAGCAGCACGCCATAAATT 62664 28 100.0 32 ............................ GACATTAGCGGACGAATCTTTGGAGACGCAAT 62604 28 100.0 32 ............................ GGAAAACTTTAAACGCTCAAGCTGGGCAATTG 62544 28 100.0 32 ............................ AGACAACGCCATGGTCGTGACCATTCCGGCAA 62484 28 100.0 32 ............................ TTGGCAGCTTTCCATCCTAGATTCCACCACTT 62424 28 100.0 32 ............................ ATTCAGCAATACAGTGTAATTTCATCGTTAAT 62364 28 100.0 32 ............................ GTTTCGCTATCCGTGAGCTTGAGCTGGTCAAG 62304 28 100.0 32 ............................ AAGTAAGGCGGCTGGTGCGTGGGGTATTGTGC 62244 28 100.0 32 ............................ CAAGTTTGCCAAGGTTGGCGCGGCTGTCGGCT 62184 28 100.0 32 ............................ TTTTTGCAAAAAGCTGAAAGACCAAGGTGGCT 62124 28 100.0 32 ............................ ATTGGGAGAAGTGGGGCAACGTTGGCGAACAC 62064 28 100.0 32 ............................ ACGCTTGAATCACTGGCCAGCGATTCAAATCA 62004 28 100.0 32 ............................ TGAACTTCGATTTCCTCACTACATAACGTAAT 61944 28 100.0 32 ............................ AGTGGTAAACGTGAGTTAGGCCTGCCAACCAT 61884 28 100.0 32 ............................ TGATGATGAAGTCTCTAGCAACCCGCTAGCAT 61824 28 100.0 32 ............................ CGAATATAAGGGTCAGCCTTACACACAAGAGC 61764 28 100.0 32 ............................ ATTTGGTGCGGCGGTGAAAGGTGGGAGCGTTT 61704 28 100.0 32 ............................ TTTTTGCAAAAAGCTGAAAGACCAAGGTGGCT 61644 28 100.0 32 ............................ ATTGGGAGAAGTGGGGCAACGTTGGCGAACAC 61584 28 100.0 32 ............................ ACGCTTGAATCACTGGCCAGCGATTCAAATCA 61524 28 100.0 32 ............................ TGAACTTCGATTTCCTCACTACATAACGTAAT 61464 28 100.0 32 ............................ AGTGGTAAACGTGAGTTAGGCCTGCCAACCAT 61404 28 100.0 32 ............................ CGCTTGGATGCAAACAACAACAAAAGCGAACA 61344 28 100.0 32 ............................ TGATGATGAAGTCTCTAGCAACCCGCTAGCAT 61284 28 100.0 32 ............................ CATTAGCGAGTCATCCTGTAAAGAACGAGGCC 61224 28 100.0 32 ............................ GATTGATTGGGGCGCATAATGATTTATCTCAG 61164 28 100.0 32 ............................ ATTGAAATGTTCTGAACGATGAAAATCACATC 61104 28 100.0 32 ............................ AGTTGAGCCAGTTCCAGACCCTGACAACCCAA 61044 28 100.0 32 ............................ TTTGGCCGTAATAAGAGATCACTTTCTGCCAT 60984 28 100.0 32 ............................ AGTTCAAAAAAGTACACAAAGCCGCCCGTCGA 60924 28 100.0 32 ............................ AGTACGGATACTCAGGTACGTTTGAAGAGTTT 60864 28 100.0 32 ............................ ATTAGTGGTGCGAAGATGTGAAATGAGCGTGG 60804 28 100.0 32 ............................ TTGGTTCAGCACAGAAACTGGACGTTTGCAAA 60744 28 100.0 32 ............................ TGTCTATGAAGTGACAAAGCGAATGATTGTGC 60684 28 100.0 32 ............................ TGCCTCGTGGGTGAGCGTTTCCTGCACTAACC 60624 28 100.0 32 ............................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 60564 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 60504 28 100.0 32 ............................ CGCTGGGCCAAAAAAGACCAGGATATCTTTTT 60444 28 100.0 32 ............................ GCTCTCGATATCGGGCACACCCTACACGCGCA 60384 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 60324 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 60264 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================== ================== 94 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //