Array 1 2199046-2198741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJQUA010000001.1 Brachymonas denitrificans isolate Isolate6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2199045 32 100.0 35 ................................ ATGCTGCGCCAGTCCGTTACTTGTAGGGGCATAGA 2198978 32 100.0 37 ................................ TCGGCCACTACCCGCCGATGGCAATGGTGCGTGACCG 2198909 32 100.0 35 ................................ AGCAGCACATCCTGGCCGCCGGTGGCGTGGCGTCC 2198842 32 100.0 37 ................................ TCGAAGTTGCGCATGTGGCTCACGGTAGGCCAGGCCG 2198773 32 75.0 0 .........TA.......T.A..C.....TCA | T [2198743] ========== ====== ====== ====== ================================ ===================================== ================== 5 32 95.0 36 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : ACGGCAAATCGTTCGACAGCAGCAGACAAGGCCCATCCTGGATGCCCTGCACGAGTGGATGACACTGCAACGGCGACAGGTGCCCGACGGATCGGCAACCGCCAAGGCGCTGGACTACAGCCTGCGAAGATGGGATGCGCTGACCCGATTCGTGGGTGACGGACAACTGCCCGTGGACAACAACTGGATCGAGAACCAGATCCGGCCCATTGCCGTCGGTCGCAACAACTGGCTGTTTGCCGGTAGTTTGCGCGCGGGCCAGCGGGCCGCCGCCGTCATGAGCCTGATCCAGTCGGCGCGCATGAACGGGCACGACCCGTATGCCTACCTCAAGGAAGTGCTCACGCGGCTGCACACGCACAAAGCCAGTCGCATCGACGAACTCTTGCCGCACCGCTGGCAACCAGGCGCCATCTAAGTCTCAGCCACGTCCGCCGGTGGCGGTCAACATGGGATCACCGCGCGCTTACGATACGCCGGCTACTCGGATGTCAATCGGT # Right flank : AAGCGATTTGCCGAATGCCCCTCAGCCTGTTCGCGCACTTTGTATTACCGAACAGGTAGAAAAAAGCAGATGCTGAGCGTAGATTCCATTAGGGTAGGTTTGTCAATCAACTGTTTTGAAGGAGACACCGTGTCCAAAACCCCAACTTCCGCCACCAAGCACCCCCCAACACCGCCCAGGTCGCCAATAACACCAACAAACAAGGCGACAAGCCCCCCACCCAGCTCAATCAGCCCCAGCGCACACCGGAAAGCCGGAATGACCGAGAATCCCTCCTAGGCGGCAACAACCAGTCGCAGTCGCGACGCGGTGCCTACTCCAGCAACCCCTGATCGATTCTCCACCCCATGCCCCAACTCTTCGACACCTACCCCCTAGCAGGCCGCACCCTCCCCAACCGCATCGTCATGGCCCCCATGACCCGCGCCCGCTCCCCCAGCCACGTCCCCGACGAGCTGCTCGCCACCTACTACAGCCAGCGCGCCAGCGCCGGCCTGATC # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2205545-2201572 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJQUA010000001.1 Brachymonas denitrificans isolate Isolate6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 2205544 32 100.0 33 ................................ TCCAGCGCTGCTCCAGCTTCGATCGCCATGCTT 2205479 32 100.0 34 ................................ TGCCAGACACTGCAGTGCCTGCAGAGTTGCGCAC 2205413 32 100.0 35 ................................ TGGGCGAACGCCCTGCCCGGCAAGGCCCTGCGCAG 2205346 32 100.0 35 ................................ AGCCAGGACGGCGGCGAGCAGGCCGGCGAAGACCT 2205279 32 100.0 34 ................................ GCATCACATCCGGCATGGACTTTGTGAACCAGAT 2205213 32 100.0 33 ................................ AATCTGACAACCGGGTTTGTATCTGCGCTCGGC 2205148 32 100.0 34 ................................ ATTCGGGCGTGGGAGCGTGCCAAAGCATCGACCA 2205082 32 100.0 36 ................................ CACGTCTGGCCGTTGAAGATGAACAGATCGCCGCCG 2205014 32 100.0 34 ................................ ATGGCCCAGCAGCCACGATCCGTAAACAGAAGGG 2204948 32 100.0 33 ................................ GGATTGGCCAGGGGCGCCATAGATGTTGATGGT 2204883 32 100.0 34 ................................ CTCGTGGTAGCTCTTTTCCTCGTACTCCCCGGTG 2204817 32 100.0 34 ................................ TGAACTGCGGTATGTCGAACACACCGGAGAGGCC 2204751 32 100.0 36 ................................ GGTGCAACCACCGACGAGGCCAAGGCGGCAGCCGTC 2204683 32 100.0 37 ................................ CGCATTTACTGCGGCCCTGCCGTGGTCGAGCTACCAG 2204614 32 100.0 34 ................................ CGCGTATGCCTCCGACAAATTGTTGATGGGCCGG 2204548 32 100.0 35 ................................ CGGTGACATCAATGCCCAGCGCCTTGTTCGCATCG 2204481 32 100.0 35 ................................ CGCGCATGATGGCGATCGGCTTGGGGAGCGTACCC 2204414 32 100.0 37 ................................ ATTTCGTTTGAGCCGCTGCTCGGTGACGTGGGCGAAG 2204345 32 100.0 34 ................................ GTTGCGGACTGGTAGCCTTCTTCGATGGTGCGGT 2204279 32 100.0 33 ................................ CATGAGAATGTCGCCATATCGCCCCTTACGCCA 2204214 32 100.0 34 ................................ CCAGAAGCATACTCGCGCAGCGTCTTGAAGCCAT 2204148 32 100.0 36 ................................ TTGTTCCGGAAAGGACAGACCCACCATGAAGCTCAA 2204080 32 100.0 34 ................................ ATTTCTACGGAGAAATCATGAACCTGATTGACAT 2204014 32 100.0 35 ................................ CTCTGGTCATACCAACAGTCGCCGACGAAGGTTCT 2203947 32 100.0 38 ................................ CTGCTCCTCGTGCTCGTGCTTGAGATGGAGAGCTGCCT 2203877 32 100.0 38 ................................ ACTGCATCAAGATACTGCACCAGCGTGCGCAGACGGCG 2203807 32 100.0 35 ................................ ACATCACATCCGGCATGGACTTTGTGAACCAGATT 2203740 32 100.0 36 ................................ CACGCCACCGCAGGCCGCGATGCGGGCAAGGTGTAC 2203672 32 100.0 35 ................................ GATTACGCACATCCCGGAGAGACGGCGGGAAGGTT 2203605 32 100.0 35 ................................ TTTTGCCGCTGAAAGGTGGCGCAGCGGCACCGCCA 2203538 32 100.0 34 ................................ CGCAATGGTCTGGACATGAACAGTCCGACCATCA 2203472 32 100.0 33 ................................ CACCACTGACCGTTGCGGATGGCGTCGGCACCC 2203407 32 100.0 35 ................................ GCCAGTGGCTCAAAGGACTGGCGCTATGCTGCCGC 2203340 32 100.0 36 ................................ GATCCGTCAATGTCCGTTTTCGGCGTGTCGATAGAG 2203272 32 100.0 35 ................................ AGCGACTGAGGGCGCAGAAGCGCTCCCCGCTGACC 2203205 32 100.0 37 ................................ GGCACGTTCATGGCGAACTACGGCAAGGCATTTGGCG 2203136 32 100.0 35 ................................ CGGTCCGCGCCGATGTGAGTTACAGCCAAGCGGAC 2203069 32 100.0 35 ................................ CACTGCCGCAGGGCAAATGCATCGTCATGACTCCG 2203002 32 100.0 34 ................................ TACGCCAGCGCCAATGCGCCGGGCTCATTGCACT 2202936 32 100.0 35 ................................ AATGGCTACACCATTGCCACGAAGTCGCCTGGCCT 2202869 32 100.0 33 ................................ ACGATCACGTGGGCCAGCTCCAAGATCATCGCG 2202804 32 100.0 34 ................................ GTAGTCGGCGCTGTTTCGGTAGTGCGCCTTGTTC 2202738 32 100.0 34 ................................ TTCTTGGCCAGAACGGCAGTGATGGGCGGCTTCG 2202672 32 100.0 35 ................................ TCCCCCTCCCTCGCCGCGCTCTCTGTCCGCAGCAT 2202605 32 100.0 33 ................................ AAGCGCCTGCTAATCGATGGGGACAGCACGATG 2202540 32 100.0 34 ................................ AGCTTTTCGATGTCAGGCTTTGCCATGTGCGCAC 2202474 32 100.0 36 ................................ CCGATCCTGCCGATTGACTGCGAAGACCGCCTGTAC 2202406 32 100.0 34 ................................ ACGCGAAGGGGCATGGATGATCGCCACTGTCACC 2202340 32 100.0 34 ................................ TGGCGAGCTCTTGGACGGCACGATGCGGTACCGG 2202274 32 100.0 35 ................................ GATGGCATCGGTTGCCACCTCGCGTGTCGCATCGG 2202207 32 100.0 35 ................................ ACTGCATCAAGAACATCGATGGTGTCGCGCACCTC 2202140 32 100.0 35 ................................ AAGCCGATGCCGAAGCGGGAACGGTTCTCGCTGCG 2202073 32 100.0 34 ................................ AGGACAATCATCAGCAGCCAGCCGTCGGCCTCGG 2202007 32 100.0 33 ................................ ATCGAACTGATCTATCAAACCAAAAAAACCATC 2201942 32 100.0 34 ................................ AGCTAGAGAGGTACGCGACATGCAACGAGCACCC 2201876 32 100.0 34 ................................ TTGCGTCACCCACAAAACTTTGCTGTTGACGGTG 2201810 32 100.0 35 ................................ CACGCCACGACGGCACCCTGCACGGCACAGCAGGC 2201743 32 100.0 34 ................................ TCGCTCACCTCCGATCCGGCCACGTAGCCGGGAC 2201677 32 100.0 42 ................................ GTTGAGTGGTGTCGTAATCGCGCGTGTCGCGGCTAACTTCTT 2201603 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================== ================== 60 32 100.0 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : ACCCGCCTTTTCTTTGGAAGTGAGATTTGCGCATGATGGTCCTTGTCAGCTATGACGTGCACACAAGCGATCCTGGAGGAGCGCGGCGCCTTCGCCGCATTGCCCGTGTTTGCCAGAACTACGGGCAGCGAGTCCAATTTTCTGTGTTTGAACTTCACGTTGATCCCGCTCTGTGGACACATGTGCGAGAGCAGCTTTGTGGCTTGATTGATGAGTCCGCTGACAGTTTGCGTTTCTACCACCTCGGCGCGAAGTGGCACGGAAAAGTGGAGCATGTGGGAGCCAAGGCAACCTTGGACCTAGAGGGCCCCTTGGTTCTTTGATGCGCGAACCTAAAGCGATCGAGCTGTTCCTAGGCGGTTCGCGCGGCGCCAACATCTTGTGATCATTAAAAATTTCAGAAATTGAGTTGTCTTGGTTGCGTTGATGATCAGGTCATGCGGGGTAATCGCATTTGGGGTGGATATTGGCGTTGTTATACGTGTAGGTAAGATGACAGG # Right flank : ATGCGATACGCCGTATGCGTTCGGTGAACCCATCTTGAGTCGAGGACGGTAATCGACGATCGTCCCCACGAAGGAGATCGTGGGGACGATGGAACGATTGATCGATGGACAGCGCCGACTGCGGCGCGAGTACAGCGCTGATTTCAAGGCGCTGGTGTTGGCTCAAACCCGTGGGCCGGGTGCATCTGTGGCCGGTGTAGCCTTGAGTCACGGCCTGCACCCGAATATGGTGCACCGCTGGTTACGCGAAGAGCGCTTGACGGGTACACACGTCCAGCAGCAACCGCCGGCCTTCGTTGCCCTACCTGTTCCGACGGGCGTCAGCGATGTTCGCGTTGCTCAGACGGCAGGGGCTGCCTCGGGCGCGGAGGGCGAGTTCATTCGTATCGAACTGCAGCGTACCGGCGCCACCATCACGATTACCTGGCCGGTGACGGTGGCTGCTCAATGCGCCCAGGCACTGCGTGAGTTGCTGCGATGATCCGTATTGATGCCCTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //