Array 1 187659-185611 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJK01000003.1 Listeria monocytogenes strain FSL L7-0410 NODE_3_length_316732_cov_17.947763, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 187658 29 100.0 37 ............................. GTATTTTTTAACTGCTCTTGTTCAAGTTTTAGCTCTT 187592 29 100.0 36 ............................. TCTCACATTGTTTCTTTCGTCATATTGCGGCTTATT 187527 29 86.2 37 .......AG..G......T.......... GATGCCGTATCAATCCAGAATTTTCCCGTTCCCGCAT 187461 29 100.0 36 ............................. TTAAACGAAACAGGGTGCGACAACATGACGGACTAT 187396 29 100.0 38 ............................. AATGAAAATCAAGCCTAAATTTTGATCAGAAACTTTTT 187329 29 100.0 36 ............................. ATACTTTTTGCCAGCTCTTTTGCACTTGGGATAAGG 187264 29 100.0 36 ............................. GTGCACCTCACCTTTTTTATCTTCGTAGCGCCACGG 187199 29 100.0 36 ............................. GTTGAAAAGACTATCCTGCGATGTAATAACTTAATT 187134 29 100.0 37 ............................. GTTGTTAATGAAGAAGGAAAAGGTATTTTGAAATTCA 187068 29 100.0 37 ............................. AATTATTGACGTAAATGAGCGGTATAAAGCTGGCTGG 187002 29 100.0 36 ............................. AGTTGATTTTTTAGAAGGAAACTACTATAATATAAA 186937 29 100.0 36 ............................. GACGATGCCAGAGAAATATTAGGTTTCGAAAAACTT 186872 29 100.0 37 ............................. ATGTAAAAGAAATGCCGACGTTTGCACTGGGCTTCAT 186806 29 100.0 36 ............................. ACCGAAATTCTTAAATTCCTTAACGGATATACGTTC 186741 29 100.0 34 ............................. TTTGAAAAATACTTGTCAAAACGGCAAGTGTTTT 186678 29 100.0 36 ............................. ATTGAAGACATAAAAATAGTTGATAAGGAACAATCT 186613 29 100.0 36 ............................. TTCAGAGTTGCTTTTTCGTCCCACACGTAACTACTA 186548 29 100.0 34 ............................. CCTCTTCAGCAGCCAATTTGGCTTTTATCTCCGC 186485 29 100.0 37 ............................. CTGGTAAGGCTGGTGAAGGTTTAACAACAGTATTCAA 186419 29 100.0 36 ............................. ATGAAAAGAACGCGTGAAAACATCTGTATCGGATAA 186354 29 100.0 35 ............................. TGGGTTTAATCTTACCCATCACAAAAAAAGCTACG 186290 29 100.0 36 ............................. GAAGAAGGGGTTATGGAAAAGGAACTAATTATAAAT 186225 29 100.0 36 ............................. GAGACTCAAAAGTTAGTGTTAAAACTAGCGGCTACT 186160 29 100.0 35 ............................. CGCGAACGCTGCAAGTCTTCTTTTTGACGGACAAC 186096 29 100.0 35 ............................. TTGGTTACTTTCTTCTAGACACAACCAGTCATTCA 186032 29 100.0 35 ............................. TGTTCTATTCCCTTCCTTCAATACTAAAGCTTTTT 185968 29 100.0 35 ............................. ATACAATGATGTCGAGACTTGAAGAAGGCGGCAAA 185904 29 100.0 36 ............................. TTAAAAAGTAAATTTGACTTTATTTTAATCGATGTT 185839 29 100.0 36 ............................. AATGGTATATTTTGTCAACAGGTTTATCCTATTTAG 185774 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 185705 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 185640 29 86.2 0 ...............C..A....C....C | A [185615] ========== ====== ====== ====== ============================= ======================================== ================== 32 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAAAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAATAATCCCCATACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGTAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 204316-203253 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJK01000003.1 Listeria monocytogenes strain FSL L7-0410 NODE_3_length_316732_cov_17.947763, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 204315 29 100.0 35 ............................. TTTTTTATCCAAGTTAGCTGGTATTTTCTTACCAG 204251 29 100.0 35 ............................. TGAACACCACCTGCGGCAAAGACATGTGGAACACC 204187 29 100.0 37 ............................. TTAATCCGCGCGCGGTATTGTATTTAAATTCAACATC 204121 29 100.0 37 ............................. TACCCATGATTAATTTTCTATTTTCATTTTGACTCTC 204055 29 100.0 36 ............................. ATCGCTTTTATATTTTTTGAACTTCGGCACCCATTC 203990 29 100.0 34 ............................. TACTCTGTAGATAACAGCCCAGAATCTCCTTTAA 203927 29 100.0 36 ............................. ACCTTCTTTTTTGTACAAAATATCTTTTTCAACACT 203862 29 96.6 34 ..........T.................. GCAATAGAGTTTTCTTCTTTGCTTTCTACACTTT 203799 29 100.0 38 ............................. AACACAAGATACCTTAGCGAGTTTAAACAAGCAGAAGC 203732 29 100.0 36 ............................. AGGACTCAATTCAGTGCCGAAGGGTTCAACCGCTTC 203667 29 100.0 35 ............................. TGTGTCCAAGGATGCGAGTAGGGGTGCTTGTGAGC 203603 29 96.6 36 .........................G... TTTAGACACTTGAGAAGGAGAGCACGAGAGCTTCTT 203538 29 100.0 36 ............................. CTTGGATGAAATTCTGTAATAGTATTTTGTTTTTGT 203473 29 96.6 34 ..............A.............. ATTCATCTTCTTCGTCTGAATCCAAATCAGTCGA 203410 29 96.6 35 ..............A.............. GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 203346 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 203280 28 82.8 0 ......A........CA.-....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCATTCAGATTTAACTCCATCACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //