Array 1 180416-181764 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBA01000013.1 Pseudomonas aeruginosa strain env101 NODE_13_length_230555_cov_10.2524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180416 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 180476 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 180536 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 180596 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 180656 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 180716 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 180776 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 180836 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 180896 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 180956 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 181016 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 181076 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 181136 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 181196 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 181256 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 181316 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 181376 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 181436 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 181496 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 181556 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 181616 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 181676 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 181737 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 192284-190639 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBA01000013.1 Pseudomonas aeruginosa strain env101 NODE_13_length_230555_cov_10.2524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 192283 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 192223 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 192163 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 192103 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 192043 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 191983 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 191923 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 191863 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 191803 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 191743 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 191683 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 191623 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 191562 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 191502 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 191442 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 191382 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 191322 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 191262 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 191202 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 191142 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 191086 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 191026 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 190966 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 190906 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 190846 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 190786 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 190726 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 190666 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1757-709 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBA01000005.1 Pseudomonas aeruginosa strain env101 NODE_5_length_494363_cov_11.5093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1756 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 1696 28 100.0 32 ............................ TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA 1636 28 100.0 32 ............................ ATATCCAACACCGGGACGGGAGTCCGATCCTA 1576 28 100.0 32 ............................ AAAACGAGCCACGGGTGTCGGCCTTCGACTCA 1516 28 100.0 32 ............................ GACCTCGTCGATCTTCTTGCCCAGGGCGAAAT 1456 28 100.0 32 ............................ TCAAAGCGCGAACCATCCAACGGCAGTTCGCA 1396 28 100.0 32 ............................ ATAAGGCTGTCGTCACAGCGCTGCATGGCTGA 1336 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 1276 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 1216 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1156 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 1096 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 1036 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 976 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 916 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 856 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 796 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 736 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAGCGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //