Array 1 987821-989434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019201.1 Salmonella enterica subsp. enterica serovar Muenster str. 420 isolate CFSAN001301 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 987821 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 987882 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 987943 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 988004 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 988065 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 988126 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 988187 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 988248 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 988309 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 988370 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 988431 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 988492 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 988553 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 988614 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 988675 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 988736 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 988797 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 988858 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 988919 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 988980 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 989041 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 989102 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 989163 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 989224 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 989285 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 989346 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 989407 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAACCAGAAAGCTGAGTTTTTTGAGTGCGTTATCAACGTCCTGAAAAATGATTACGGGGTAAGTGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1007307-1011120 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019201.1 Salmonella enterica subsp. enterica serovar Muenster str. 420 isolate CFSAN001301 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1007307 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 1007368 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 1007429 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 1007490 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 1007551 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 1007612 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 1007673 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 1007734 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 1007795 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 1007856 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 1007917 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 1007978 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 1008040 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 1008101 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 1008162 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 1008223 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 1008284 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 1008345 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 1008406 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 1008467 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 1008528 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 1008589 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 1008650 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 1008711 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 1008773 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 1008834 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 1008895 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 1008956 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 1009017 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 1009078 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 1009139 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 1009200 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 1009261 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 1009322 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 1009383 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 1009445 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 1009506 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 1009567 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 1009628 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 1009689 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 1009750 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 1009811 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 1009872 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 1009933 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 1009994 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 1010055 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 1010116 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 1010177 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 1010238 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 1010300 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 1010361 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 1010422 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 1010483 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 1010544 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 1010605 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 1010666 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 1010727 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 1010788 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 1010849 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 1010910 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1010971 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 1011032 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1011093 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //