Array 1 47226-46164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQL01000003.1 Methanosarcina sp. 1.H.A.2.2 scaffold41_1_size49586-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 47225 37 100.0 35 ..................................... ATACAGACCTCAAGCCTCGCAGGCGCAAATACAAT 47153 37 100.0 38 ..................................... TATTTATGACGATTGTAAATATAATTGCTACCATAAAT 47078 37 100.0 36 ..................................... ATAAAAAATAAAGGATATAAAGATGGGAAAATAGGT 47005 37 100.0 36 ..................................... TTGCGGCTTCTGCTGAGTCTTCAAGGTTGAGATAAA 46932 37 100.0 39 ..................................... AAAACCATTGCGCGCCCGATCCAGCAAAATCCGTACAGG 46856 37 100.0 35 ..................................... TTAGGAGGCTCGACCGGGGCAGATTCAGTAACGGC 46784 37 100.0 35 ..................................... ATCAAGAGGCAGTTCCATGTGGTTTCGCTCATAAC 46712 37 100.0 36 ..................................... AAAAATTTTCGTAAGTTTTTTTTCGTTTTTAGGAAG 46639 37 97.3 36 ..............................G...... CCTGGCACTCAAGGATAAGAGCGGTCAGAAAAGTAA 46566 37 100.0 37 ..................................... AAGAATGGCTCGCGTCTGAACTACTTTTTATCGTAAG 46492 37 100.0 37 ..................................... TATTTACGCTCGATACAATACTCCCTAAACGTTTTAT 46418 37 100.0 33 ..................................... CCCAGGCCGCGTTGCCCCGGGGGCCAATGTAAT 46348 37 100.0 38 ..................................... ATCCAGACGGGCTTCGTCTGCCTTGTATTCTCCCCAGG 46273 37 100.0 36 ..................................... ATACAAATGCCAAACGGGTGACCAAAGAAAGTTTTC 46200 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 99.8 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTAGAAATTACTAACATCCCGACAAAATATATTATTTCATTATTAACTGGAATCGTTATTTCTATTGAAGCACACATAATTACAGATATAATATACACTAAAGCAAAAAGAAAATCCACTAAAATAAAAAAGAAACTAAAAAATATTCGCACCACCAAATCATAAATTTCTATATTCTATTTTCTACATTCTATTTTCTACATTCTATTTTTTAGTCAGTTTTTATAGAATTCCATACCAGACGGTTGTTGGTGGAATATAATGTTTACTCTTTATAGTGGGCTTTTCGTTGGATTGATCATTGATTATTAACATGAGCCGATAATAAAAAACAAAAGTTTAATAGAAAGAAAAGCATATGTCCAGATGTTTCCAAACCATCAAAAACCCTGATTTTCTTGTATTTATAAAAGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGAGCTCATTTCAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : TCTTCCTGTATTTCCATTATCCCGACAATGCCTCTGTCGAGAAGTAGCTTCCATAAAAAATGCTAAAACCAAAACCTAAAATAACCCCCAAAGTAATTATTTACAAGGGAGAATAGTCATGACCAGCGAAACCGAAACTCCAGAATGTTGCCCTCGATTTGACCCCGCCCCCTGGGATGGAAAAGTCTTTGATTGGAACAATAAAAGGTTCATCAAGGATTCCGTTACCACACAGAATTACATGCCCCTGAACTTCGGGGAAGTAATAATGAGGATGAACGAGAAAGTTGCCAGGGCTGGTGCGGAAATGCCTGACGGGCTCTGTCTGTCGGACCATACCTCCGAAAGCAATATGGACCTCTATCTGGCTGTTGACAGAGAGGTCGATGGGGCTGAAAATCTAACCCTGAGCGGGAAGTTCTTGAGCAAAGTGTACGAGGGAGATTTTGAAAAAACAGGGGAATGGTGTGCGGACTTTGAAGGCTATGCAAAAGGCCGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 16042-20035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQL01000088.1 Methanosarcina sp. 1.H.A.2.2 scaffold26_1_size92283-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16042 29 100.0 32 ............................. TATGCATGTCCGGGATTCAATCCTTAACGACG 16103 29 100.0 32 ............................. TCGTATCCGATCAGTTTCATGAACTCATCGAT 16164 29 100.0 32 ............................. CTTGTCATGTTTGTTATCCCCCCCGTATTGAA 16225 29 100.0 32 ............................. AAACGGTACAGAACCTTTCTCTTTTGTTCTTT 16286 29 100.0 32 ............................. GCCAATTCCTTTTATGTTTGCATCGATTGTTT 16347 29 100.0 32 ............................. GGTACCATCCCTAAAAAAGGCTTTTTCGTTTC 16408 29 100.0 32 ............................. GCATGTTCTAGATTATTCAATGATGAGAAAAA 16469 29 100.0 32 ............................. CACATCAGTTGACCATGTGGTTACGTGGTTTA 16530 29 100.0 32 ............................. TCGTATCCGATCAGTTTCATGAACTCGTCGAT 16591 29 100.0 32 ............................. AACCCCTTCATTGTCGGGATACGTGGATCAGG 16652 29 100.0 32 ............................. CCACCTTCACCTTTGTAACCTTCTCCTCATCA 16713 29 100.0 32 ............................. GTTATGTAGACTGTTATCTGTCTTTATTCCGT 16774 29 100.0 32 ............................. CCACCATCGAGAACATCATTTCAGGAAATCAC 16835 29 100.0 32 ............................. TTGTATATCAATGTGCTTAATTCATCGGTTAT 16896 29 100.0 32 ............................. AACGCTATGGATGCAACCGCAGAGGAAATTGA 16957 29 100.0 32 ............................. GTTGTATTCGGTTAGTCCGGGTTCGATGTATT 17018 29 100.0 32 ............................. TAATTCCGGTACAGGCCCTTACTCACCCCGCA 17079 29 100.0 32 ............................. GACAGGAAGGTAACGTAACATTCCATTTATTG 17140 29 100.0 32 ............................. CCGCTAAAAAAGGAGGTGGTCCACCTTATGGA 17201 29 100.0 32 ............................. AAGATTTTTACCAAAGGTTAACCCCTCTTCTA 17262 29 100.0 32 ............................. TTCAGGACAGTAGAGCAGATCAAAAAAGAAAA 17323 29 100.0 32 ............................. GTATACAGAACCCCCACCGGAGACAGTCCCCC 17384 29 100.0 32 ............................. GCTGCGACGGAGAGCGCGAGAAATAGAGCGGA 17445 29 100.0 32 ............................. GCATCCCCGCCGAAGCTGCAGCTTTTGCAGCG 17506 29 100.0 32 ............................. TATCCTTGATTTCATTGTTTTCAATGATGATG 17567 29 100.0 32 ............................. ACAACTACGTTGCTATACAGTACGATATGGAT 17628 29 100.0 32 ............................. TTATTCTACCAAATTCATTGTCTTAAATTTTC 17689 29 96.6 32 ............................A TATGTTAATAGAAGCACCTTGTGAAGTGTTTG 17750 29 100.0 32 ............................. GCAATGATTGATATGCTTGTTGCTGAAGAGTT 17811 29 100.0 32 ............................. GTCTGAAGGCCAGATGAACGTGTGTTTCATTC 17872 29 100.0 32 ............................. TTAAATCATCTTTCAGGAATTTTGTGCCTGTA 17933 29 100.0 32 ............................. GCAGAGGATCTTATACTTAAGCTTAATATCAA 17994 29 100.0 32 ............................. ACATGAACCATGTACCAATGGGCGAAACAACC 18055 29 100.0 32 ............................. GTTTTGTAGTCTCAGGAAACACTTATCCACTA 18116 29 100.0 32 ............................. GTACCCACGAAACTCACTTCGAGGCTGATGGC 18177 29 100.0 32 ............................. CTACCATTTACCTTGTCTTCATTTCTCCAAAT 18238 29 100.0 32 ............................. ACACATGGGATTCTGCCTTGTATTCCTTACAA 18299 29 100.0 32 ............................. CTTTACAACATCTTCCTGGCTTACTTTTTTAT 18360 29 100.0 32 ............................. GTGCAGCACTATGGCAACTAAAACACATGTTT 18421 29 100.0 32 ............................. GATTAAATACCTTTGCAGATACAGCACCTACT 18482 29 100.0 32 ............................. CCCTTATAACCCCTGATTATATAGGGGATTCC 18543 29 100.0 32 ............................. GTTTAAGTTTGCGTCTAAACCCTGTTTCCTGT 18604 29 100.0 32 ............................. CACCGAAAGCACGCTTACAAACTGTTTACGGT 18665 29 100.0 32 ............................. CCTCCTTCTATCATGTATTTTGTAGCCAATTA 18726 29 100.0 32 ............................. ATTCGATACGAGGAAAGGACTACTGTGTAATT 18787 29 100.0 32 ............................. TCTCATCTCATCCGGTAATGTGGCCAAAAGTA 18848 29 100.0 32 ............................. GTTGAGAGAATAGTTAAAGTTAAGGTGTTTGT 18909 29 100.0 32 ............................. TTAATTTACTTTTTGCTACTGTAGTTTTTGAA 18970 29 100.0 32 ............................. TTACAATTGATAATTATTGGAGGCACTAAACG 19031 29 100.0 32 ............................. GTCAAAAAGCAAAGAATGACCGAGCATTTCAG 19092 29 100.0 32 ............................. GGTACATTCTGCAAAAATCAGAAAAACGCCGC 19153 29 100.0 32 ............................. ATATGTTCGCATAGGGGTGTAAAAAATGTCTA 19214 29 100.0 32 ............................. CCCATAGGCTGCCGGAGCTGTGGGGGAAAATG 19275 29 93.1 32 ............CA............... CAACCCTCAATAGTGAATATAACAGGCTCAAT 19336 29 93.1 32 ............CA............... TCACCAATCTAACACGGTATGATAAACATGCT 19397 29 93.1 32 ............CA............... TCAACCCCCTTCTAAAAATTATATGATGCTTG 19458 29 93.1 32 ............CA............... CGGGTGGGGGCCTGCTGCTCGGCAGTGTGGGC 19519 29 93.1 32 ............CA............... ATAGCTGGAACATCCTATATTTCCCCCACCCT 19580 29 93.1 32 ............CA............... GATCTGTATAAAAAACTCTGAAAATACACAGG 19641 29 93.1 32 ............CA............... TTTGTTTAATGCGTTCCCGTTCTGCCTATGAG 19702 29 100.0 32 ............................. GTATATAATCACTGACGAAATTAATAAAATAC 19763 29 100.0 32 ............................. ACCTAGTCCCAAATACAAAACCCTCCACACTT 19824 29 100.0 32 ............................. GGGTTGCCGTTTGTGTATCGTCCATAGAATTC 19885 29 100.0 32 ............................. CCCAGGCTGATATACAAACTTCCGTATTTCCC 19946 29 100.0 32 ............................. GACCAGAGGATCAGACCCTGAGAGGACCAGAC 20007 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 66 29 99.2 32 GAGTTCCCCACAAGCGTGGGGATGAACCG # Left flank : CTGCTGGAGACATCCCTATTCCTGAAGAACCACCCGAATCACTCCCTCCTGCAATTCCAAATGAAAGGGGGCTTAATGATGCTGGTCATCGTCCTTGAAAACACAACTCCCAGACTGAGGGGGAGATTGACTCTCTGGCTTCTGGAAATCAGGGCTGGAGTATATGTAGGAGATTATTCTGTCAAGGTAAGGGATATGATCTGGGAAAATGTAGAAGCCGAGTTCAATGACGGGAATATTGAAGGAAGCGCGATTATGATCTGGTCCGCAAGAAACGAAATTGGATTTGATTTCAAAGTCCTCGGCGAAAGCCGCAGAATCCCAAGAGAAATGGATGGAATAAAGTTAATATCCTTCATTCCCGAAATTAAAACCGAAGAGTAGATAACTGGAGACATCATGTTTTTAAAATATCGTACATTTTATACAGGCATTAATATAAATCTATTTATATATGTCCCCGGAAAAACTATCCCTACTGATAATATAAAAGGTAAAGA # Right flank : GGCAGATCCTTGATTGTAAACTATTATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACTCTTTTTCTCCTGTGGTTGATTTGTGGTTTATGTGATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAACAGTGCAGCAATCTCCTTTCCCCGAGTGCAGACAAGGTCAGGTTTGTTGTCTGACCCTGTCTTCATTTTTCTCAGGTTTGAACACCTTTTCTATTAGCTTTCCTATGATTTTTCCTATAACGATCAACATTATTTTCTCAGTTATTTCTTCGTAACTCATTGTTTATCATAAATCTGTCATGTTCATTGTATTAAAATCAAATGAATTGACCGTCTATGACACACCCACCAATCGTTCGATTTGTTATTACGTTTTCTTTTGGTCTGTAGCAATTTTCTAAAGTGCTATGCGTGAAGGTAATAATCTTCATTCGCGAGCAAGATCCCCTAAAACAAGGCTTGAAACAAAAAGAAAGGTTAATTGAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACAAGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //