Array 1 485787-487644 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFH01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain 3197 3197_3_length_714892_cov_79.211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 485787 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 485848 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 485909 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 485970 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 486031 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 486092 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 486153 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 486214 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 486275 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 486336 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 486397 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 486458 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 486519 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 486580 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 486641 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 486702 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 486763 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 486824 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 486885 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 486946 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 487007 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 487068 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 487129 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 487190 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 487251 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 487312 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 487373 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 487434 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 487495 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 487556 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 487617 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 504326-506065 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFH01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain 3197 3197_3_length_714892_cov_79.211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504326 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 504387 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 504448 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 504509 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 504570 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 504631 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 504692 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 504753 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 504814 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 504875 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 504936 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 504997 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 505058 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 505119 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 505180 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 505241 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 505302 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 505363 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 505425 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 505487 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 505548 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 505609 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 505670 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 505731 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 505792 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 505853 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 505914 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 505975 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 506036 29 100.0 0 ............................. | A [506063] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //