Array 1 11-1150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAW010000143.1 Mycobacterium persicum strain CSURQ1465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 11 38 100.0 35 ...................................... TTTGGCCCTGCACATCACCCGGACCATGGACCAGG 84 38 97.4 37 A..................................... AGGTTGAGCCATGTAGCAGTCCCGCTCCACCACCGCC 159 38 100.0 36 ...................................... TCATTAATCTCCAACGACACCGGGCCTGCCGAATTA 233 38 100.0 35 ...................................... TACCCACCGCAGGGCGGATCTCCGCGCGAGGCTAA 306 38 100.0 35 ...................................... TAGGGTCCGCGGCGCTGATCAACTGCGCCCAGATC 379 38 94.7 36 T....A................................ CTTGCTATCGCGCCGGGCTCCTATGAGCTGCGCCGA 453 38 97.4 35 C..................................... TGTCAGGGTGCCACTTATGGCGAACCCCGTCTCGT 526 38 100.0 35 ...................................... CTAGCTTTGGAGCCGCAGCGGCGCCGCGCGGCGCT 599 38 97.4 35 C..................................... AGCAACGACTCGTCGACCAATGGGACGCCCCGTCG 672 38 97.4 37 C..................................... TCCGCCGGTAGGTCCTCTATAAGCTCACCACCCAAGC 747 38 100.0 33 ...................................... CTGAACCATTACAACTACGAGCGCCCGCATGCG 818 38 100.0 37 ...................................... TGCCGGTGCTTGCCGACCCACGCAAGATCCTCGTCGC 893 38 100.0 35 ...................................... CTTTCAGGCGGCGATGCGGAGTAGGTCGATGATGG 966 38 97.4 35 A..................................... TTTTGACCCGAGTGTCCAGCGATACCGCACACGGC 1039 38 100.0 36 ...................................... ATCCGCGAAGCCGACCTGGCCGCCACACCGACCCAC 1113 38 86.8 0 C.....A..........T......T............T | ========== ====== ====== ====== ====================================== ===================================== ================== 16 38 98.0 36 GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : ATGTAGCCGAG # Right flank : TCGACCCCACGGCTCACACCATCGACAAGGTTGTCAAGCGTTGGATGACTTTCTGCGGCGCCGATGATTCGAAAGATCAGGCTCGACAAATGACCCTAGTGGTGTGTCACGCAAATAGTTAACTGCATGTTCGGTATTCTGGATCGGTGAGCGCCTCACCTGCAGTTGCTTTGGCCATGTCGGTTGGCGAGCGTGAAACGTTGGAGAGGTTGGCGCGGTCTGATTCGGTGCCGCATCGGCAGGTGATGCGCGCGCGTGCGTTGCTGATGGCTGCTGACGGCGTGGCGAACACCCGCATCGCTGAGGAGGTGGGGGTGACACCGGTGACGGTGCGTAGCTGGCGCAAAAGGTTCAGCGAGGACGGGCTGGCCAAGCTGGGACAGGTACGTAGGGGACGCGGCCGCAAAGCCACGATCTCAGACGCGCAGGTCGCTGAGATCGCGCGATTGACCACCGAGGAGACCCCGCCCGGCCACACGCATTGGTCATGCCGCACGATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18-932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAW010000263.1 Mycobacterium persicum strain CSURQ1465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 18 38 97.4 35 C..................................... ACCGGGATGCTCATGACAGCGCCGACAACGCGGAT 91 38 97.4 35 G..................................... CGGGGGAGCAGTGGGTTAGGGGTGCCGGTCATCAA 164 38 97.4 34 C..................................... CTGATATCAAAGAGCGCTTCTTCGTCGCTGGTGA 236 38 97.4 36 C..................................... TGGCTTTCGGAATTCAATCTCCACGCCGAAGTCAAA 310 38 97.4 35 G..................................... GGAAACGATACCGACACACTCACGGCCGGACTGGC 383 38 100.0 34 ...................................... GACGAAAACGTCGGGGTCCGGGACATGGCCCTGC 455 38 97.4 36 A..................................... AGTCACATCAGGATCCGGAAGGTCAACAGGGCCTTC 529 38 97.4 34 G..................................... GCTCAACGGTGGTGCATTGGCAGGAGATCAGCGA 601 38 100.0 36 ...................................... CCATCCACGTCGGCCGTGGTTACCTCTGGGTACACC 675 38 100.0 37 ...................................... GTCAAGGACAACGGCAAAGTAGACATGCTCGGCTTGA 750 38 100.0 34 ...................................... ACCGAAGAAGCCCAAAACGTTTGCCGCCGCACAC 822 38 100.0 35 ...................................... AGGCCGAGTTTGTCGTACAGTTCCGCAGCCTCAGG 895 38 97.4 0 G..................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 13 38 98.4 35 TGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : AATGGGACGCCCCGTCGC # Right flank : GTCCTGGGTGAACGGCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 813-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEAW010000279.1 Mycobacterium persicum strain CSURQ1465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 812 38 100.0 34 ...................................... GTCCTGGGTGAACGGCGCCCCCGGATGACCGGCA 740 38 97.4 38 A..................................... TTTTCGACGCTGCGCGTCGCCACGGATGCGTTCCTGCC 664 38 100.0 36 ...................................... GGGTAGTGGACCACCCAAGCGGCAAGGGGAAAGCCC 590 38 97.4 34 T..................................... ACATGTGGCACGGCACTCAGGTCCCCGCCGATCT 518 38 100.0 36 ...................................... GGTTTGTTGGCGTTGTTTGGTGGTTTTGTGGTCGGT 444 38 100.0 34 ...................................... CTTGCTGTACCCGTCGCGGGTGATGGACGTGTAC 372 38 97.4 36 A..................................... GTTAAATCCGTCGGGCGGTCGGTATCCGCCGATGTT 298 38 100.0 36 ...................................... AGCGCAATGGGCGTACCCTCGACGACATCGTTGACC 224 38 100.0 35 ...................................... GGCGTAGATGACATCGATACGGACCTGCTGGGTCT 151 38 100.0 34 ...................................... TGGTACGAGGATGACGTTGTCTACGAGGCCGTCA 79 38 97.4 0 C..................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 11 38 99.1 35 GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : | # Right flank : CCCGGCCTGGTCGGAGACATTCGGCCCTGAAGTAGGCGGCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.90,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //