Array 1 874269-873242 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKMT01000001.1 Enterococcus faecalis strain LIT12 A36 2987_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 874268 37 97.3 29 ....................................T GTTCTTTTAAGCTAAAACCTTTATTATCT 874202 37 100.0 29 ..................................... GGTAATGATGTAATGAGTGCAGAATATAA 874136 37 97.3 29 ....................................G AACAGCAAGCGCAATAGTAATTTTAGCAA 874070 37 97.3 29 ....................................C TGGCATATTGGACTTCTAACTTTTATGTT 874004 37 97.3 29 ....................................C CCATTAATTAAAGTAATCACGGCATTTAT 873938 37 100.0 29 ..................................... CATTCTATTTCTATTAAGGCTCTACACAT 873872 37 97.3 29 ....................................T GTTCAGTAATATCATAATCCCATTTAACT 873806 37 97.3 29 ....................................G TGCAACTGCAGCTTCTGATGCATTTCCCA 873740 37 97.3 29 ....................................C CGTGTGTTAAATGGTGCGTATCGATTCTA 873674 37 97.3 29 ....................................T CATGAATACGCCATCCGATTATATATTGA 873608 37 100.0 29 ..................................... ACAATTAGCGCCAGCTGGCCAGATTCAAT 873542 37 100.0 29 ..................................... CAGAAATATCAAACGCAAAAAAAGGTTTC 873476 37 97.3 29 ....................................G TTAAATTTTACATCAACAAGCCAACCGTT 873410 37 97.3 29 ....................................G AAAAGCAGTTCGAGCGGAAACTGCGACCA 873344 37 94.6 29 ....................G...............G ACTTACAAAAGACTGTGATTTACGTTATA 873278 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 16 37 98.0 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 186161-185331 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKMT01000002.1 Enterococcus faecalis strain LIT12 A36 2987_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 186160 37 100.0 29 ..................................... AGTGCAACTAGCTAGAATTGAATCAAACT 186094 37 97.3 29 ....................................C CACCTGTTGCATATATAGCATTCACAAGT 186028 37 97.3 30 ....................................T ATTTAGACCGTCAGTTGAAGTCCAAATTGA 185961 37 100.0 29 ..................................... TTTAAGATTAGATATGAACAACTTACGTT 185895 37 97.3 29 ....................................T CAATCCATTCAGCAACTATATTGTGTTTA 185829 37 100.0 29 ..................................... TGTACTCATTCTAATGTATAAGAAGTGCA 185763 37 97.3 29 ....................................T AAACAGTCTACCATGTAACTAGTGAATGC 185697 37 97.3 29 ....................................T TATAGAAGTACAGTCACCATCAGCGACCT 185631 37 100.0 29 ..................................... GGGCTGCAGGAGTTAATGTTACAATCTCA 185565 37 100.0 29 ..................................... TCATCTCATCGACTAAATATGCTTTGTAT 185499 37 97.3 29 ....................................C CACTTTATTAATTGCTTGTCAACACGTCT 185433 37 97.3 29 ....................................G TATCTACGTGCATAATCATATCGACTCAT 185367 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================== ================== 13 37 98.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : AATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAGAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //