Array 1 420734-419853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQQ010000008.1 Nocardia transvalensis strain BJ06-0148 NODE_8_length_457308_cov_21.663514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 420733 30 96.7 31 .............................T GGGCGACCGCAACGGCGGTCGCGCTGATGTC 420672 30 96.7 31 .............................T CGGCGGTGTCGAAATCGGCGGGATCGGCCCC 420611 30 96.7 31 .............................G CCGTGAGAACTTCTTCGGACCGGCACCTGAG 420550 30 100.0 31 .............................. CTCTCGACGAACTGCGTTCCGACACAGCCCG 420489 30 100.0 31 .............................. AGCGAGGGCACAAGCTCATCCGGGCGGTGAG 420428 30 100.0 31 .............................. CCATTCGGTCGGCCACGATCGGCACGATGTC 420367 30 96.7 31 .............................T ACTCATGTACCTCCGCGAGGACAAGCCGCAC 420306 30 93.3 31 ..........................T..A CTGCGGGCCTGGCAATTGGCTCCGTGATCGA 420245 30 100.0 31 .............................. CGTATACGGCGAACTACCTGCGCGGAATTCT 420184 30 96.7 31 .............................A TCAGTGGCGGGACTGCGGCATCTGCGACAAG 420123 30 100.0 30 .............................. ATGAGCGGGTGGCGTCGCTGCAGGATCGTC 420063 30 90.0 31 .......T......T..............A ATGTGCGCGTGAGCATTCGAACCGCTTCGTC 420002 30 96.7 31 ..............A............... GCGCCCGGGCATGGTGGGCGGCCGTGCGACA 419941 30 93.3 31 ..........T.................A. AACGGTCGACGACATCCGTACCTCGCTCAAT 419880 28 86.7 0 ...........-.........-......AA | ========== ====== ====== ====== ============================== =============================== ================== 15 30 96.2 31 GTCCTCCCCACGCACGTGGGGGTGCGCCGC # Left flank : CTGAAAACACGCCATTACCTTGCCGATATCGTGCAGTCCCGCCCAGAACATCAGCAGACGCCGAGCATGCTCAACATCCACACCCATTCCATCGGCAAGAAACTTCTGAAGCCCGTCCGAAAGGTACTGCTCCCAAAGCATTCCGGCCGCCGCGCTAGCATCCAGGAGGTGACAGACCAATGGATACGGCCCGGGCAGTCCTTTTGACTTGCCCCACAACCGCAGATCGATCTCACTCTGATCACCCATCATGCCCCTCGGAACAAAGCTCGCGACTACGACCGAGACACTACGGCGACGCACCGACAAAAACCGCGAGACCGCCTGACCGCCTTTGGAATCGCGCTACCCAACCCAAGTGGCGGACAGACCGTCACGATCCTTACACCAACACTCCAACGTATGACACGCCGAACCATACAATTCCGTCCGGTCGGAACATGACGCCGCCAATAACCACGAAACGCCGTACAGGCTCGAAGCAGAGCAGGTCAGCAAGT # Right flank : TGCCCGCGCCTGACGGTCGGGGGCGGTCGCGTCGTCGTGGGGCTTACCGCGCGGCCAACGGCGGCCATTCGGGTCGCTGTGTTCGGCCGCGCGGACGCGGTCGATCAATTCAGTGGGGCCAACGGTTGCCAGAATGCGCAGGACCTCGTCCCATGTCGCGAGCTGGAATCGGTCCACCAGGCGCGCGGCGCCGTCGCTGAGCGCGGCGAATGCAGCAAGCTCTGCGACCGGTAGCCTTCCGGTGATCGCCTCGTCGGCGGCGGCCGGGTCGGCACTGGCAACCCAGAATCCGTTGTCGCCCGGCTGATTGCGGTGCGCCCGCATCGACTCGACGTAGGCAGTCAATGCGTTGGCGTGTTCGGCGGTGCCGCACGGCAGTTGGTCGAGCCGGCTCCGGTACGGTGCGCCGACCAGCGCCTCCCGGTTGTCGGTGATGGTGAACGCGCCACCGGTTGTGGTGCCCAGCAGCAGGGTTGAATCGGCGAGCACGAGGTAGTCCA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 430969-430452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQQ010000008.1 Nocardia transvalensis strain BJ06-0148 NODE_8_length_457308_cov_21.663514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 430968 30 96.7 31 .............................A TCGAGGTGAGGATTTCGGTGGCGCTGGTTTC 430907 30 100.0 31 .............................. TGCGTGTCGACGGCGTGGTGACCGATGAATG 430846 30 100.0 31 .............................. TCGACATCTCCACGTTGTCGCCCCAGCGCAA 430785 30 93.3 31 ..........G..................C GTAAGCCCGGCCTACGACGGGACGTGTTCCT 430724 30 100.0 31 .............................. TGATTCTTCCGGCCTACCGCTACGAGCCAGC 430663 30 96.7 31 .............................C CCTATACCGGTCATGTCTCGCCAGGGTCGAA 430602 30 93.3 31 .........................A...A TAACAAGCGTGGGTGTTGCGACGGCCACCAG 430541 29 86.7 31 T.......G............-.......T TGCAAGCCAATCCTCGGTACCTACAGCTCAG 430481 30 90.0 0 T......T..................T... | ========== ====== ====== ====== ============================== =============================== ================== 9 30 95.2 31 CTCCTCCCCACGCACGTGGGGGTGCGCCGG # Left flank : GCTACCAACGGCGATTGTCCGACACCGCGATCACCAGCCGGGAGGTCCTGATCCGGTTGCGGGTACGACGGTTGTTCTGCGACAAATCCGACTGTGGCAAAGGACTTTCGCCGAGCAGGTGCCGACGCTGGCGTCTCGGCTTGCCCGCCGAACGACGATACTGCAACGGTTGCTGTGCGCGGTCGCGCTGGTGTTGGGTGGTCGTGCCAGGGCGAATCCCCAGGGCTTCGTCCGAATCTGCCTGCTTGCACCAAACTCCGGGACTGGAGCACAGGCGACCCCAGAACAGACACATACCCCGTAGGCCGACGGTCGATACCCAAACACAGCTGCTATCAACGCGGAGACCGTCCAGCACGAGATCGCCAAAGCACGCCATCCTCAGCAGAATCATCAGCTATGCCTTCGGCTCCAGAACGACCTGAACGCGCCAAACCCAGCCATCAGCCTCCGAATCCTGTAAACGTGATGCGCGTCGAGAAACATGCAGGTCACAAAGT # Right flank : GGTGCATCGGTCCGACGAACGCGCCACGATCCTCTCTCCACACGTGCGTCCCCGCAGCCAATTTCCACGCGCAGTCCGGTATCAGAAGGCGCGTGTCGCATGTTGCGTCTGGGAGTGCGACTGTTGGCCAGGTGTTTCTTCGCATTTTCTGCGGATTTCTTCATTCACGACGAGCGTGCGGGGCCTTCGATAGTGCATGCTGTGTGCAGCCAGGCGCGAACATCAACCTGGCAATCGTGTTATCCGGTCCGGAAGAGGACAAAGTGGTGTCGTAGAGCGACTCGTACGCAACCAGTGCTCGGGGTCAGAAGTCGATATCGACCATGTCGGCGTCCGATTCGCCTGGCGGGAGGAACCGCACGAGCTGTAACCCGTCGAAATCGGCGATGCGGCGGCGACGTTCGCCGGCGGTTTTGATCTGGAAGCCCTGTTCGTTTGCCGCAGGATGGATGCATACGGCTTCGCCGTCGCCGACCGAGGCGGCGACCGCGTCCCATAGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCACGCACGTGGGGGTGCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //