Array 1 467750-469974 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKI01000002.1 Salmonella sp. sc-h43 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 467750 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 467811 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 467872 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 467933 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 467995 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 468056 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 468117 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 468178 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 468239 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 468300 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 468361 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 468422 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 468483 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 468544 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 468605 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 468666 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 468727 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 468788 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 468849 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 468910 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 468971 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 469032 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 469093 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 469154 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 469215 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 469276 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 469337 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 469398 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 469459 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 469520 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 469581 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 469642 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 469703 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 469764 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 469825 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 469886 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 469947 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 97.9 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487607-488917 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKI01000002.1 Salmonella sp. sc-h43 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 487607 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 487668 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 487729 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 487790 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 487851 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 487912 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 487973 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 488034 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 488095 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 488156 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 488217 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 488278 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 488339 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 488400 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 488461 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 488522 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 488583 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 488644 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 488705 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 488766 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 488827 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 488888 29 100.0 0 ............................. | A [488915] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //