Array 1 103746-104244 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOS01000009.1 Lentilactobacillus buchneri subsp. silagei strain SG162 sequence09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 103746 36 97.2 30 ................................C... CCCAATCTTTTGCGCTTTCGTCATTCGCCG 103812 36 100.0 30 .................................... GGAAATCAATTGGAGGGTATTACAATGAAT 103878 36 100.0 30 .................................... CAAATCAAATCTACATACTTCCAAATCATT 103944 36 100.0 30 .................................... ATGGATGAATAAATAGTGTCCATTTTAGAC 104010 36 100.0 30 .................................... TTAATGTATAAGTGGATCCCGAGATTGTGG 104076 36 100.0 31 .................................... ATGACAGTTCTGATGATGATTCAGTTAATGG 104143 36 100.0 30 .................................... CCGACGATCCACTAGCTGTGGAAAATGTGA 104209 36 83.3 0 ...............C........C......G.GAT | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.6 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : CAGCGATGGTGTCAGTGACAAGTATAATTCTGGCATTTTTAAGCAATTAGAGGCTGTGTTGACTGATGATCAGCGTAAATCGATAACTGATATTAATAATCAATTGTATACGGTCGTCCAGCAGTGTTTGTTTATGATCGACTTACCTCTGGAAGTCACTTATGATTGGGATTTAAAGAGGCTGTTTAAATACTGTAAAATTCATTTTAACGCTGATACCATGCTGAATCCTTATGCTATAATTGAATCAATTATCAAAATTCATTTAGAGTGTGGATTGAAGTCGGCTGTTGGTTTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTAATTGATCTATCCAAGCTCACAAGTTCCGCGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACCAATTGCGACTTTTACTACATCGACGAGGACTTTGTTGATTGGCATTTATAATGCATTAAAATTCGGTTATAAAAAATCG # Right flank : TGGCTTCTCAACAGATCATTCATTCTGGATCATCTTCCACCACTAAAAAATAAGTTCTCCGCCTAGTATTTGCTAAGCAGGGAACTTATTGTGTTTATTTATTTAACAATTGACTTAGCCAACGCATACCCCAGCTTCTGAGCCGTTTGGGCAGTTGGATGAATCTCATGATCCTTCAAAGTGACATCCTTGTTGCTGTTAGTGATAATGTTGGGTGCGATCTGTTGGAAATTGACCACTTTGGCGCCCATTGACTTGTAGAGCCTTGCTTCAGCTGCCCGCAAGTCGTGGTAGGTGTAGCCATACATATCACTCATGTTGTCACGATTCATGCCATTGGCGTCAAACCGTGAAATTGGCAGGATGCCGTAAATCTTGGCGGACGGATTCAACTTTTGAATCATCTTAATGTTATAGCGCAGGTGGCGCATGACATTCTTCAAACTTCCCGAACCGGAATAGTTGGTGTAATCATTGGTCCCGATATGAACGAAGATGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 310594-310745 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOS01000001.1 Lentilactobacillus buchneri subsp. silagei strain SG162 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 310594 29 93.1 32 NN........................... CCTTCTTGGTAATCTCTTTGTATTGCTCAGGA 310655 29 100.0 33 ............................. TCTTGAATCTGTTCATCCCGCTTGGAATCTTTG 310717 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 3 29 97.7 33 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : TTTGTTTAGTGTATTCCCCACGTACGTAGGGGTGATCCTACATGGTAGGAAAAGTCTTAGCGGCACACGTTGTATTCCCCACGTACGTAGGGGTGATCCCAGTCTGGAGGACTAAACAATGAAAATAACCATGTATTCCCCACGTACGTAGGGGTGATCCTAGCGATAACTCTGCTCCAAACCCTTTGGCGTTGTATTCCCCACGTACGTAGGGGTGATCCTCAAGTTCTGGTTTAGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCACGGTGATAGATTTACCACGTGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGCTGTAATCCCCACGCACGTAGGGATGATCCACAATTACCCCCT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 321783-321572 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOS01000001.1 Lentilactobacillus buchneri subsp. silagei strain SG162 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 321782 28 82.8 32 ...-.CC........T.........A... ACATACTGAGCAGCGAGCGGGGTCTCGTAAGG 321722 29 93.1 32 ...............T.........A... AGGTAAATATCATTGGCATCAGTGAAGACCAC 321661 29 100.0 32 ............................. TTGACCTGTTGTTCTTTGACAAGCTCAATCCG 321600 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 AGGATTACCCCTACACACGTGGGGACTAC # Left flank : AACAGGGCTATACAAATTTTGTCACTACCAAACAAGCTCGAACCGCTTATCACAACCTATTCACCACTCTTTTGAATAATAAAGGGAACTCCGCAGTCTTGTATCATTGTTCAGCCGGCAAGGACCGGGCAGGTGCCGGAACGATTTTCATCTTGTCAGCACTCGGCGTCAAGAAGCTGACGATTGTCGACGACTATTTGGCAACCAAGGGGGTTTATGAAAAACATTATGCTCAGTTGAAGAAGAGTGGCGCCTCTCAAAAGGAACTCCAGACAGTGAAGGCACTAGAAGATGTCAAACCTGCTTACATCAACGCCACTTACTCGGCGGTGAAGAAGCATTATGGCACGATGGATAATTTCTTGAATAAGGGCCTCAGGGTTTCGAATACCGATATTGCTAAGTTGCGGGCGATGTATTTGAAATAAGGATCTTTGAGGATGTTGAAAAACGGCTTTGCCTTTGGTTGGTGAAGTCGTTTTTTGTTTGGTTTGGATTGG # Right flank : TTGGTCCGTTCCAGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAAAGAAGTAGAGGTGTAAGGCGTGGATAGGATTACCCCTACACACGTGGGGAATACTTGTTGATTTTTCATGAACGATTCGGTATAGTCGGATTACCCCTACACACGTGGGGAATACACTAAACAAACC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATTACCCCTACACACGTGGGGACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 3 323004-323215 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOS01000001.1 Lentilactobacillus buchneri subsp. silagei strain SG162 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 323004 29 96.6 32 ............................C TTGCCGATCCACAACCGATGTAAATTCATCAA 323065 29 100.0 32 ............................. AGACAGGTGCAACTAGAGCCGCCGCAAAAATA 323126 29 100.0 32 ............................. GTTCACCCCGAAGTGTTTCAAGGCACTGGCAA 323187 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : CTTTTGATCGTTTTTCCATCAGTGGTTCGATACCCGCCCAAGTCTCGGACGTTCATGGCGCCTTTCAAATCAATTTCATGCACTTTGACTCCCTGGGTTGCCACGACCTGGGCATTTGCTGGAGCAACCGATTGGATGGCTGCGCCCGTAGCGGAGAAGACGGCCAGTGCCAGGGATGCAATCAGAACAGATTTTTTCAATGTGATTTCCTCCAAACTTTTTTGATTCAGTGTTTAGTTTACGGGAGGCGTGTAATGATTTTGTTTGCATAAGGTAATGATTTGGTAAATGATGCTTAGCAGATTTTTTGCTGGATACCAGAGGATCGTGAAATAAAATGGTTGATGGAGCTGTACACTATTGGGATAATTAAAACGGCAGAATCGGCTGATTTGTTTCATGCGACTAAATAATTAAGGTCAGATGCTTTCGTATTTGCAAGTCATTGAAAATGAGTGTTTTGTCATTTTCAAATGGCTTAATGGCGGCGTTTCTTTAGT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 324103-324439 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOS01000001.1 Lentilactobacillus buchneri subsp. silagei strain SG162 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 324103 29 100.0 32 ............................. ATAAGAGTTGGGGGACAGCAGCCTTGCTCTCA 324164 29 100.0 32 ............................. CTTCCAAGTGAGGCGGTAAGGAGCATTTTATG 324225 29 96.6 32 .......T..................... TACGGTGGCGATCACATTGACCCATACGGCTA 324286 29 89.7 32 ...........A.G...........A... TCACGGTGTCCAGATTTTTGCCGGAACTCCCA 324347 29 93.1 32 ...........A.G............... GCTCGCGCGGGACCCGGCTTCCCTGGACCCTT GGG [324365] 324411 29 89.7 0 ........T.....T..G........... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.9 32 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATCCTCGCGTTCACAGCGTCCTGCCAATGGTCAATCA # Right flank : TGCGACTAACGAACTTCAAATGATGGATTCTTAGTATTCCCCACATGTGTGGGGGCTCCTTTCTTGCAAAAAACTATTTTCACAAACGCGTTGGGTTGGCTCCAAAAAGGTGGAACACATTCAGAAAAGTTCAAGACAAAAATTAGCCTCTGATGGCGCAACAGTTGTAACCCGCCGCTCAAGTCCGGCAATAATTCTGCCGAAACTCAAAAATAGCACCTAACCAGTTGGCTTTCACCAACTAGTCAGGTGCTATTAGTATTTTGCGTAACCATCAACCAATTTCAAAACAGATACAATAATTTGAAAATGCCATATAGATTTCGTTTCTAACGATAATTGTCTAACATCTTAAACTTATGGTTGTCTTGGAAATATGCTCCAACCTTTAGCAACAATTTATCATTACCCTTAGCCGCCTCAAATTGAATTCCCAGCGGCATTTTCTGCTTGCTAACATATGTTGGTAAACTGATTGCCGGCTCTCCTGAAAGGTTGGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 5 327402-327614 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOS01000001.1 Lentilactobacillus buchneri subsp. silagei strain SG162 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 327402 29 100.0 32 ............................. ACTTCGAGTTACCAGCCTTACGGATACCGTCA 327463 29 96.6 32 ............................C AAGCATATCAAGTCTTCTCGCGGGAACGCGGG 327524 29 93.1 32 ......T....A................. GATTTGATTCAATCATTTCGTTATCAGATTTG 327585 29 93.1 0 ...........AC................ | G [327603] ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTATTCCCCACGTGTGTAGGGGTGATCCT # Left flank : TGTGCGATTGATTGGTTTTGTTGGTAAAGTTCAAAAGTATTCGTCCAAATTTCTAAAAACCAATGGCTTCATTTATCTGCTTTGGGTTAGTTTGGCAGTGTTAATCATTTCAGCAACATTGTATTCTCTTGCGGAGAACGTTTCGTGGGGTGAATCGTTGTGGTGGGCAGTCGCAACCGCAACGACTGTCGGTTATGGTGATATTTCGCCACATACCCTTGTGGGAAAGATTGCTGCGGTGATGCTGATGATGGTGGGAATTGGGATTATTGGCTCGCTTACGAGTGCGATGACAACGTTCTTTACCAATCGAGACAACGTGGATAATTCGTCCAAGATTTATCGGAAGCTTGAGATGATTGAGTCGGAGAATAGGGATTTGAAGAAGCAATTGGATAAGCTTGAGAGGAAATTGGATAAGTGATTGAATCGCAACTCAAAGTGATGGGAAATGAGTGATTTTTCATTTTAAAACGGCTTGGTTGCGGCGTTTGTTTAGT # Right flank : TTCTCCGCAGGGTGTGCTTTGCTTCATCAGTATCACAGTAAGTGTGGATTGATTCTAAGTATCTAGAAATGTCGAGGTTCAGTACGACTAAATAAATAGTATTGCACTGACTCATTAACTTGGGTCATACCTAATGCTATAAATATTGATAGGAGAACTAGCATGACAACACCAAAAGAGATTTTAGTTGACGGTTTACAAGAATTTGCCAAGAAAGTTGGCGGGAAGAGTCGCAATGGTAAAGAGCTTTTTATTACCAGAACTGCTGTTACGGATCAGCTCACACCAGACGGTAAGCAGTATACATTTATTTCTTTAATTCGAAATGATCAACAAGCTAGTGGTCCGTATTCTGGGATTTCCTTAAAAGTAAATCCGGGTATTAATCATTATCGAATTTCTTTAGATATCGGTAGTGAGGGTTTTGGAGATGACTACCAACTTGTGGCTACCCCTGGTACAAGAAGAAGGTTTGTTGAACTCCAATCTGTGATCAACGA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //