Array 1 17619-15699 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFOY01000044.1 Escherichia coli strain JML084 sequence044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17618 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 17557 29 100.0 32 ............................. TACAATTCTTGGCAAGGTCAACGCGCAAAATA 17496 29 100.0 32 ............................. TTCTCGACCGTTGCCCGTCACCGAAAAAAATC 17435 29 100.0 32 ............................. CTGCTGCTGATCCCGTTTGCGGCGTGATATAC 17374 29 100.0 32 ............................. ATGAAGGACGCTGGCAAAACAACGACAACCCC 17313 29 100.0 32 ............................. TCTCGCGGTTTACGGGCGAACCCGCGTTACTA 17252 29 100.0 32 ............................. GTGGGCGACCGCCGCCAGTTGGAGCTGGCGAC 17191 29 100.0 32 ............................. CGGGATAATTCAGCTTTCACATCACGGCAAGA 17130 29 100.0 32 ............................. GCATCTCTTCCACTTAAATCTCCTTGTTACGA 17069 29 100.0 32 ............................. GATTTACACATTGACCTAAACCGGATTCTATT 17008 29 100.0 32 ............................. TTGGCTAGATTAACGTGAATAGTATAAACAGC 16947 29 100.0 32 ............................. GGTTATTCAGGATGCCTTTAAGCCCATTCCCA 16886 29 100.0 32 ............................. GATATAGAGCGGGTACTCGAGCGGAGCGGGGA 16825 29 100.0 32 ............................. ATTTAACAAATATCCCGCGATTAATATGCGGA 16764 29 100.0 32 ............................. CCTTTTACTGGCGATTTGTGGAACTTGGCACC 16703 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 16642 29 100.0 32 ............................. CGTGATTGTTGGGATCTCATTCAGCCCGAGAT 16581 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCGCGTCACGGCTTA 16520 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 16459 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 16398 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 16337 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 16276 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 16215 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 16154 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 16093 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 16032 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 15971 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 15910 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 15849 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 15788 29 96.6 32 ............C................ CCGGCGAAGGACTTGCTCGTGTGGTTAAAGCC 15727 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43763-43001 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFOY01000044.1 Escherichia coli strain JML084 sequence044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43762 29 100.0 32 ............................. GCCTGCTCGTGAGTCCGCGGCGCGAACTGCCG 43701 29 100.0 32 ............................. ACGGCGCGTTCTTGAGTTCTGTATACTGCTCG 43640 29 100.0 32 ............................. GAATGTGGGGCGCTGCTTCATCGTCAAATTAT 43579 29 100.0 32 ............................. ATGGAAACCCGTCGCCTGGTTAAACAGGTTAT 43518 29 100.0 32 ............................. GAACTCCCTGCCACAAATCCCGAAGTGGACGC 43457 29 100.0 32 ............................. CTGGCGGCGTTTCAAATGAGGCTGGAGGCATT 43396 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 43335 29 100.0 33 ............................. ATCACCCCGAGCGTGACGCCGTTCGCCGCGTGC 43273 29 100.0 32 ............................. CTGCGGGCCTGAACGGCGAAAATGTTGGTGAC 43212 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 43151 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 43090 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 43029 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAAACACCCAGTTGGACGCGTACGTGATATCGAAGCACTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACGATATCAGCCATTTA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGCCAGCGGGGATAACCATTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGTCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGGATTACATCAGTATGTTTGGTTAACTCCTTGAAAATGCCTTTATTCATCGCGTTGTAGCGTTTGGCGTTGCTCTCAAAAGGCATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //