Array 1 603426-604860 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 603426 36 100.0 35 .................................... TACTTGAAAGTATTGTAACCATCACAAATGTTAGT 603497 36 100.0 34 .................................... TCCACTATTTTCGTATTAATTCTAGCAGGATTAA 603567 36 100.0 36 .................................... ATTAAAACTAGCTAGATGTCAGAGAGCCAGTTTTAG 603639 36 100.0 37 .................................... CTATGACAATTTTTGCTGTTTCTTTTGGGATGATAAG 603712 36 100.0 37 .................................... GCACCTTTGCCAGGTTAGCGGCAACTAACACAGTATC 603785 36 100.0 38 .................................... CGCCATGGGAGGCGAGAAGTTCTTCGAGTTGAGCTAAA 603859 36 100.0 34 .................................... CAGACCCCCACTCGTCGTAAAAATGCGATAAGTG 603929 36 100.0 36 .................................... AAATAAAACTCCTCCAAAATCTGGAATTTTATAACC 604001 36 100.0 38 .................................... AATAAAGAAAAAGAAGTGGGAAAACAAAAAATCGAAGC 604075 36 100.0 35 .................................... CAGAAGTATCGGTGTCAATAATATCGAAACATTGA 604146 36 100.0 43 .................................... ACCCGAGGGGGCACAGGCTGGGGTAAAAGCAATCGTGATCATT 604225 36 100.0 35 .................................... CAAAAAGGTAATGCTCGTATATTTCTACATTGCTA 604296 36 100.0 41 .................................... CTTCTAGAGGAGTTTCTCCTGGTTCAATTTTTTCGCTGATT 604373 36 100.0 37 .................................... CGGAAAGTCCGACAATTCCTCGTTGCCGCACGCTTCC 604446 36 100.0 37 .................................... CGATCAGATTTTAGAAAAGATTCTAAAGATTTTTGAG 604519 36 97.2 36 ...........T........................ TCATTCAGTTTCATCTGAGCCTCCTTTGCTTTCCAA 604591 36 97.2 50 ...........T........................ TTTATTCGGGATTCGTACATCGGCTCCGAATTTAATTCTTCCAGGGTAGG 604677 36 97.2 41 ...........T........................ AGGAACTGCACGGGCCCTCCACCGGCACCGCACCCAAAACA 604754 36 97.2 35 ...........T........................ AGGAGACACTGGAGTTCTGTCATATTTTCACCCCG 604825 36 97.2 0 ...........T........................ | ========== ====== ====== ====== ==================================== ================================================== ================== 20 36 99.3 38 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : GCGCTCGCCCGTTACGAACTGCAAACATAAAATCGACTATCTATCTCCAACAGATTCACCACTCCGCCAGGTTTTAAACCCCAGGCGGACTAAGGGACTTAACTAAAATTTTTACCTTCAGCGTGCATCGACAACCAAACTGTAGCATCCATATTCAACACAAAATAGCCCAACTATGTACATCACATCCCGCGCACCTACAATCCGGAACATTTCCCTAGCCACCCTCAAGGGCACTATCACTCTCATCTCCCCACTCGCCGAAATGTGCTGAAGTTAGCACTTTTTTATTGAGTTTGGGAGGCTAATCTAGCCCATATCGACGCACCTCCCTTTGTTTGTGTAACCCTTATGGTTTGGTTGAGGTGCGTCGATGCTTTGCAGGGATTGAGTTTGAGGCTTATAGTTCGATGCTTTTTATCGTTTACCTGTGCTATATTTTAGCGGTGCGTCGATTTGACGGCTGAATCCCTCTCTGGGTATGGTCTCTGCGGCGAACT # Right flank : CGCTAAAACAAAATTAGTGGAAGTCTTCTATTAATGCGACAGTTTAAGGGCAACCATAAATAGCTGTTGACAAAAGACTAGATTTCTAATAGTCTAATTTTGGGGGGATGCCTTTTGGGGGACGCCTCTACCGCATAGAGTGAACGTCCTTAAGGCATCGTCCTATCCCCCAGCCGAAGGGTTACGGCACTGTCTAGCAAGTTAACTTGTCACTTGCTAGAAATACATAGCTAAGACAAAGTGTGTCGAAGTCTTCTATTAATGCGGAATCGAAGGAGGCTTCGACTTCACACGACACCGCAAACAGAAATTCAAAAATCAGAGCCTTCTGTAGTGCCAAAAGCTCTAAATTTTCAACCTCTGGAAAACTCCAAAGACAAACTTTTACAACTCAAATTTCTGCAATTAATCCGAGTGGCGAACAATTAAAAAGCACAAAAAAAGCCCCACAATCGGGGCAAAATATAACTATTCTCAGTCGTTGGGTGGGGGCGGGTTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : CTCCCCACTCGTTGGGGAAACTAATTGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 650343-648662 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 650342 36 100.0 36 .................................... TTTTTTAGGGGAGACAGTGCTCGTTTCATCACCATT 650270 36 100.0 42 .................................... GTAAATCATGAAACTCTTCAAGTTTGCCTTGGAAAAATGATT 650192 36 100.0 39 .................................... TTTTGAGTTACTTCTAGTATACAATCCACTTCAAACGTC 650117 36 100.0 43 .................................... TTTGGATCGTGTGTTTTTGGGAAAACAGCAGTAGCTTTTTTGG 650038 36 100.0 37 .................................... AAAAATACAGATGTAGCCAGAACAGTTTTTTAATAAA 649965 36 100.0 38 .................................... TTTGGCCGATTAAAAAAGTTTATAGGTTCAAGGCTTGA 649891 36 100.0 39 .................................... ATAATATGAAACTAAGACCAAACCAAATAAATGATTTAT 649816 36 100.0 38 .................................... TTAAAAAGATAGCCCAAGGGATAGAGATAAAACCTCCA 649742 36 100.0 44 .................................... TTGGTTTGTTGTAACTTTGCTCAATCTGTTTTGATATTTTTCAA 649662 36 100.0 38 .................................... CAGAGTGTTGTGTAGAGCTATCATCAAACGACCCGGAT 649588 36 100.0 37 .................................... GTTATCTTAAAAACAATAGCTGTAGCAACTCCATCGA 649515 36 100.0 39 .................................... AAAAAACGCTGAGACCGGTACTGTGACTAGTGATCCGAA 649440 36 100.0 41 .................................... TTCTTCTCCAAGGAATTGTTTTGACTTGGCCAAACAATCCT 649363 36 100.0 38 .................................... TAAAACAAAATCTTTAATGTCTTTAGCAGACGCTAACA 649289 36 100.0 39 .................................... CTGGTAATTGATGATCGACAAAGATTTGATCCATCTTTT 649214 36 100.0 37 .................................... TCCTTGCAAAACGAACGTTGTCATTCTGCATTTGTGT 649141 36 100.0 39 .................................... GAGATGTAGCATCAATTGGGAATGATGCTATAGAGTTTA 649066 36 100.0 41 .................................... GCCCAATCAGGGAGCTTGTATTCGTTTGGTTGGTAAATATG 648989 36 100.0 37 .................................... AAAAGACATGCTACACATTTTGCTTAGTTCAAAGGCA 648916 36 100.0 37 .................................... CCATTGGGATTCTTTTTCTGCACGTACTGCGTTAATT 648843 36 97.2 35 ...............................A.... TTTGTAGGTTACAAAGAATACGAATTTGAAAAGGC 648772 36 97.2 39 .........A.......................... TGGCAAGCTGTAATCTCGGTACAGAATTGTTGCCAATGT 648697 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 23 36 99.8 39 GTCGCAATTCACTTTTCCCCGCAAGGGGATTGAAAC # Left flank : TTACTCCCAAATAATCATATTAATTGTAGGGAATCCGTTTTTATGTTTTGTCAACGCGGGCGATCGGGCAGGTGGAAACTTGGGGTTCTGGCCCGCCGGTGACTCAAGCGCCAACTTCGATCGTTGTTTAAAGTATTTTTTTTAACACTTGACAGCTAGGGAAATTTAGGTTAATATGCCTCTATTGCTAGATTATAGTTGTAAATCCCGACAAGCCAATACAAACTTGTCGTGTTAATTACTACGTAAATCAACAGCACCAGTACCTAGAAAATTAAATAGCTCAGAGTAGTGTTTTAGCTGTTCAATCATTTAGCTATGCGACCGCCTCGCTAAATGGCTGAAACACCGATTATCTCGTATAGGCGGTCGTTCCCTTGTCCCGTAAGGGTTTTAGCGATTTTTGAGAGCTGATTTTCGGCTCTAAGTGAGATCAGCATCAGAGGCGGTCGCAAACGCCTTCTGAACCCTTTACTGGGTAAGGTTTTCAAAACTTGGTG # Right flank : TTAAAACCTGCAAAAGACTTCGCCTACGATGAAAAGAAAATGCTTTCGCGTAGCGTGCCGGAGGCCGATCGCCCTGTAGGATAGAAAAACTGCCAATTTTTCCACTGCTATGCCTGAATCCATCCAGCAAGAAGCTCAAGCCATTGTGGATAGCCTTGCATTCATTCCCTTTCAGGATTGCATAGCCCTTTCTAAAGAATTTCGCGAACTTCCGATGAGCGCTGGGATCTACGCAGTCAAGCATCGCACCCTTGGAATCCTTTACATTGGCAAAACCAGAACCTTGCGCGATCGCTTTCGTAGCGGTCACAAAGCTTTACTTTGGGCATTTATTGAAGAATTGAAAGTCACAGACATCCGAATCGCCTTTTACCAATTAGATTTCATTCAGTGGATACAGCTATCATCAGAGTTAGAAAGCCTAATCATCCAAGCTATTAACCCACCCTATAACGTGAGAATTCCAGCGAGGGACTAATTTCTATGCAAACCCAGCCTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATTCACTTTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 1286014-1286765 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1286014 37 100.0 33 ..................................... TCCAACCTTAAATTCCTGAGCTGATCGCTTTTC 1286084 37 100.0 33 ..................................... ACCATAAACCCCATAGGGGCAAGGGCCACACCA 1286154 37 100.0 36 ..................................... TCGCTCGGCTTGTTCTTGCAGCAATCGTGCGTACTG 1286227 37 100.0 37 ..................................... TTTAAAATCTAATTGGACGGATAGGCTAATCAGAGTA 1286301 37 100.0 37 ..................................... AGTTCATCTTTAGAACCGCGTACAGATCGGGATTTTC 1286375 37 100.0 34 ..................................... CAGTCACGCTTGCTACCTTTTGAAGTTGTCCACA 1286446 37 100.0 37 ..................................... AGTCATTCGATAATTCTTGAAGATTTACAAGCCAAGG 1286520 37 100.0 30 ..................................... TGGTATTGTATTGCGGTCTGTAGCCATCGA 1286587 37 100.0 35 ..................................... GTTGAAACTCCTGATGATTTCACCAAACATATTGA 1286659 37 100.0 33 ..................................... GTGGAGAAGCAGTTAAGTTGTTAATTAAATCAA 1286729 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 35 GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC # Left flank : TCGGGTGTCAATGGTGGGACTTTGGGGGCGATTTGGGGGAGTTTTTTGGGGACTTTTGCGGGTGCTGTGTTGGGGGCGGGGGTGTGTGCGATGTTTCCGGGTGTTAGCGCTGGGGTGCCGGTGGAGTTGGGGCCTGTGGCGGGGGCGATCGTGGGGGCTGGTTTGGGGGCAATTTGGGGCGTGGTTTCGGGTACTGTTTGGGGGGCTTTGGGGAAGTGGTGATCGGTTGATGTGTGTTTTTCGGTGGAAAATGCGTCTAGGAGTAGGTGTAAAAATCGAGGTGTGAAATTGGGGGGCTATAATTTAGATCCTGTAAGGGTTAGAGGCACTTCAACCAATAAAATGGGAGACGCAATCGCTGAAATCTATACAGGAAAAGGGTTTGAGGGCTGTATGAAAATGTGGGTATTGACAAGTCGAAGGCTGAAATGGTACTTTTGTTTTACGCAGACGCAAATGAACCTTGAAAACCAAATACAGCAAAGCTTCTGGAACGGGCG # Right flank : CAGCCCGCAAATTGATATTCAAGATGCGGACGCGGTGAAGCCGCAATTAACCTATAGCGGTTCTCGGAAAAATGAGGTATTCACGAATTAATTAACAATTCCCCAATCCCCCAATCTAAAATCTAAAATCTAAAATCTAAAATCTAAACTTGTACCTGATCTATCTGAGAAAGGCTATAACTCCCTATCAGGGATTGAAACCCCTTGTACAACCTTTTGCACGAAGAAAATTATTAGCCGCAATTAACCTAACTCCCTATCAGCGTGGGAGTTCCAGCGTTTGACGTTTCGGGGTCGCACATCGACGAGCCGAACCTCTACTTGAATCTAACTTAGTCTTAACTTAAACTTAACCTAATTCCCTAGTAAATCTAGCGGCTAACCGGAGTTACCTTGAGTCAGCCTGCCCCGCCTGGGAATGCGTCCGCGTGAAGAGCCAGTTCTAGTAGGAGTACAGGCAATGAGTTCTATATTTTTCAGCCCCAACGATTGGCAGACAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 4 4168610-4168801 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 4168610 35 97.1 42 ................................G.. GTTTGTTAACTCTGGGGTCAAGTTTGATAATCTGTGTTGGTG 4168687 35 100.0 45 ................................... CTGACCTGCATCGGCGCAAGGGTCGCACCAAATTTGTTGGCCCAA 4168767 35 94.3 0 .........C.....C................... | ========== ====== ====== ====== =================================== ============================================= ================== 3 35 97.1 44 CTCCCCACTGGCTGGGGAAACTAATTGAATGGAAA # Left flank : AGACTCCTTGCGCTGTCTGGGGTGTAGAATGGAGGTGAAACTAATTGAATGGAATGTATGCGGAAGTTAGTTTTCTCAGATACAGAAATGTTTTATCGTGAGCTAAAGACAGCCTTGGAGCAAAGTGAGCAAGTTGAAGTTATTACAGACTACGAGCGATATTCAGACCTTCCAGAGAAGTTAAAAACCATTTTTGAGTTACACAAGAACAAATCGGGAGAGTGGGTAAATATAGCTACAGGCGCATTCATCCCTTCTTCTGCTGGGGTTACTACAATTAACTACTCTGCCCTCTATATTTTTGCTGGTGCTGGTGCAGGTGCTATTCTTGGATTTATAGTTGGTGGCCCTGTTGGAGCAGCAGTGGGCGGTGGTATCGGAGCCATAGTTGGAACTCTTGCTGTTGTGACATCAAGCGGAAGGCATCATGTAGATATAGAAATTGATGCGAATGGTAAACTCCGGCTTAAGATTAGCCCAATCCATTGAACAACGCGACA # Right flank : ACGCGCCGCCTGCACTGCGATTTTCGCGCCAATATCGCAGAAACCGGGTTTTTTAGCTAATCTGCTAGATACAGCAAATCATTTTCGTAAAAAAACCTGGTTTCTGGCCACCCGCGCGCCATCTAACTTTGGATGGTTTCTAAAGTTTTGAGTGCTTCTGCAACGTGTGCTTTGAAGTCTAACATGGAGTCAAAAATATGCTTGACAACGCCTTCTTTGTCAATGACATAAGTTACTCTACCGGGCATAATCCACAGGGTAGCTGGAACCCCGTACAATTGCCGCACTTTGTTGCCAGTATCGCTCAGCAGTGTAAAGGGTAGCTGATATTTGGCGGCAAATTGCTGGTGAGATTTTTGCGAATCTTCGCTAATTCCTATGACTTCTGCACCTGCGTCTTTGAAGACTTCGTAGCTATCTCGAAAAGCGCAAGCTTGGGTGGTGCATCCGGGTGTGTCGTCTTTGGGGTAAAAGTAGACTATGACGTTTTTTTTACCTTT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTGGCTGGGGAAACTAATTGAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 5 4645730-4644663 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 4645729 36 97.2 38 ...........................A........ ATCATTGTGCTGGTTCCAGTGGAGCTAACTCCACCAGA 4645655 36 100.0 36 .................................... CTTCTTTTTGACAAATTTCGCAGAAGGTAGAGTTGT 4645583 36 100.0 36 .................................... TGTTTAAAAATATCCCCTCTCAAACAGATGTCAAGA 4645511 36 100.0 35 .................................... ACCGACATTGTGCCGGCATCGAAGTCTCCTTGAAT 4645440 36 100.0 38 .................................... ACCAATCACCGTTAAAGGTTGTGAAATTTGCCAAAAGT 4645366 36 100.0 38 .................................... GCTTACAGTAATAAGCTCGGCACGAAAATCCTCTGTTT 4645292 36 100.0 44 .................................... CTGATTTTTCCCGACTTTTTTTTGAACCTCCTCCTTTTGTAAAT 4645212 36 100.0 33 .................................... AAAGTGTTTCCGACCCTGTAGTTCATGCCCTTC 4645143 36 100.0 39 .................................... GCAACGTGATAGTCGCGATATTCATTTGACTCCTTGAAT 4645068 36 100.0 34 .................................... AAAACCTTTCCCTTCTTTTTGCCCTTCTGACGGA 4644998 36 100.0 38 .................................... ATTTCACTATCTCCTGGCTTCCAAACCAGAGCGTTGGA 4644924 36 100.0 45 .................................... ACAAATCTCCCGAAGCTTTTGTGTTAATGCTAATACAAAAATAAT 4644843 36 100.0 38 .................................... GTTAGCTGTCGCTAACCGTAACCTCTATCGTAACTTCG 4644769 36 100.0 35 .................................... TCCTTTTTCCAAGGCATCTTGACGTATGGTGTTGA 4644698 36 94.4 0 .................................T.T | ========== ====== ====== ====== ==================================== ============================================= ================== 15 36 99.4 38 GTCTCCTTTACCACTTCCCCGAGAGGGGATTGAAAC # Left flank : TCGATCGCCCCCCGAAAACTCAAAAAGTCAAACATTCCTAGACTCACGGGCCCCCAGAAACCGGGTTTTTTCCTCAGAAGATGCCATGCAGCCGACGAAAACCGCAAAAACCCGGTTTCTTTGATTTTGTCGATCGCCCCGACAACTCAAAAAGGGATCTCGTCCGATTTGACTCTCATTCTTGTTGACAAGTTGCAGGTTAAGGTGTATTGTGAGTTTGCGAGTTGCAAAGCTCGATCGCTCCAGAACGTTGAAAATTGCATAGTTTTATTTTGGATCTGCGGCTAGTTTCAGTGTCGCAGAATGTCAATCGACGCACCTCGGGCGATCGGCAAAACCCTGATTTTATCGTTGAGGTGCGTCGATTGCTCTCATACCAAGGGTTACGGCTTGCAAGCAACTGAGCTTATTGCAGGTTTTACGGTCTTATTGACAGGTAAAAAATGGTGCGTCGATTTGAGGCTTGAAACCCTTTCTGGGTAAGGCTCCCTGGCCGAAGA # Right flank : CAAATCCCCTGGCATCGGAATTAATCTTACCCACAGTCATGAGGCGGCAGTACCTTTCGTCGTGTCAACTTAAGGTAAAACCGATAGTCCGTCAGGGGTTGAAACCCCTGCCTCAAAGTGAAAGTCCTCTCAAAGAGGACTAATGAGTTCTTCAGTCGTCTTTGAGAGGACTTTAGCTATAAGCCCCGTGGAATTCATTCCCAGGCGGACTGCCGGGTGGGAGAACCAGCGGACTAAAAGCTTAAGTTGACACCACCAAAGGCACTACCGTTTCCCTACTCAAACCGTTACCCCCAATTGCCTTTGCCTTCTTCCTTCTGCCACACAAAAAAACCCCGGTCTCTCAAAGAAACCGGGTTTTTTGTCAATCAGACGCTTTCTTGTGATGCAGCCTAATCCCTAAAAAAATGTCATATATAAAACTCCAAAAGTCCTTTTTCCCTTCCAATATTCCCAAAGTTTGAGGAGAACCTTTCTCATCTAACAGTGGCTTCACAGCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTTACCACTTCCCCGAGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 6 4873443-4876460 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4873443 37 100.0 33 ..................................... GGAGCGTGACGCTGAGAACGAGAGCTAGCGTGA 4873513 37 100.0 35 ..................................... TGGAACAGCCTTGGGCGCTTATGGCTCCTTTCTTT 4873585 37 100.0 37 ..................................... CTAAAATCGCGCAACATCAAATTAACAGCAGCATCAA 4873659 37 100.0 37 ..................................... AGAGCTAATGCGGCTGCTGCAAGTGAATAATTTTTAT 4873733 37 100.0 43 ..................................... TTTGACCGGTTCGCTTTCGGATACCGCGAGCGCGGTTGGATTC 4873813 37 100.0 35 ..................................... AAGGGGGCGCTAGGCATTTTACATTGCTCCTCTCA 4873885 37 100.0 33 ..................................... AACTCCCTTTCCTCGTCATCGTCGGGCGGTTCC 4873955 37 100.0 31 ..................................... GCCTTTCTCGTGTGATTGTACATTTGCGAGA 4874023 37 100.0 36 ..................................... GAGAAATCTTTAAAAGCAATTTACCGAGCAAATCAG 4874096 37 100.0 33 ..................................... TCACGATGGCTGCCTTATTAGGCGGGACATTGT 4874166 37 100.0 36 ..................................... TCTTTGGTGTCCGGGGAATCTACGCCTCTCACCCTG 4874239 37 100.0 34 ..................................... CGATTAGCTACGAACAATTGGACGATGTAGATGA 4874310 37 100.0 36 ..................................... TTCACCTTTATTGTTCGCCTGGGATTCTGGTTGCTT 4874383 37 100.0 33 ..................................... TTTAAATATTAGTTGGTCATTCCGCAATTTATC 4874453 37 100.0 39 ..................................... TAAAACTCTCAGAGTAACCATGAACCCCATCGGGGCTAA 4874529 37 100.0 43 ..................................... TTTAAATATTAGTTGGTCATTCCGCAATTTATCAGACCAAATA 4874609 37 100.0 35 ..................................... TTACAAAAACGATCGCACATTTGACAAAAAGTTGT 4874681 37 100.0 37 ..................................... GTTCGGATTTATGGGAGCGAGAATAATCTCTCCCCTA 4874755 37 100.0 34 ..................................... TCTGATTAGCTTTGTCAAAGTACCTTGCACCCTT 4874826 37 100.0 33 ..................................... TTACTTTGTCTCCTTGTGGCTTGACTCTCCTGT 4874896 37 100.0 34 ..................................... TAGTTTTCTGCCCCAGGAATCTTGACTCTCCTGT 4874967 37 100.0 33 ..................................... TTATGTACGATATATCAAAGAATCGTGATTGTT 4875037 37 100.0 32 ..................................... ACAAATCGATTGATTGACGGATGATTTGGACT 4875106 37 100.0 42 ..................................... CCAATACTACAAGTAACTCCTTGAATACCACCGCCACCACAA 4875185 37 100.0 33 ..................................... GCTAATCGTCGGTGTACTAGTCGGTCTGCTAGT 4875255 37 100.0 35 ..................................... AAGCCAAGCTTTCCGGCTTCCAATCTTAAAGGAAC 4875327 37 100.0 36 ..................................... ATCAGCAGCCGGAACAAATAGCGACCGATCTTATTA 4875400 37 100.0 34 ..................................... AAGATGATTTTTAGAGAGTGAACAAATCCGATTA 4875471 37 100.0 36 ..................................... TCTATATCTCGGTTTCCGTTATTTTCAACAAGTCGA 4875544 37 100.0 38 ..................................... AGAAGAACTTAAAAAGGAAACGCCGCCGGAACCTGTTA 4875619 37 100.0 40 ..................................... TACCGATCGCCCGCAATTCGATTTACCCCACGGGAAGCAG 4875696 37 100.0 34 ..................................... TCCACAACTTCGATTTGTTCGTCAGCGGGCGATC 4875767 37 100.0 36 ..................................... TTTCTTGAGTGCGTTGAGCTTATTGCCGTACTGTCT 4875840 37 100.0 35 ..................................... GAAAATTGTTAACCTTCCAGCTTCTCTCAATCCAC 4875912 37 100.0 40 ..................................... TTATCCTGTTTGGGGTTATTCCCCGCCCTTTCGGTTTTCA 4875989 37 100.0 34 ..................................... AGGTGGATTCTCAGTTCTATCGAAGGGATTAGGG 4876060 37 100.0 38 ..................................... CACACATCGACAAATACAATTCAACTTCCTTGCTAATC 4876135 37 100.0 35 ..................................... TTGTCCGTAGTTTTGCCAGAGTTGCAAATACGTTT 4876207 37 97.3 37 ....A................................ CAGTAATTGCTGATGAAGTCTCATCAGAACAGGCTTC 4876281 37 94.6 35 ....A............T................... CTGTATATCAGTGATTCCCGTAGCATTCCTAAATC 4876353 37 91.9 34 ....A...T........T................... TCCTTGCGATTGACAATGAAGCCCGCCAGCGAGC 4876424 37 91.9 0 ............G....TT.................. | ========== ====== ====== ====== ===================================== =========================================== ================== 42 37 99.4 36 GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC # Left flank : TTGGATGAATTGATGCAGCAAGTTTGGCAAAAACTCGACGAGATGAACGAAAAAGAGGCGGCGGAACAGTTAGCAGTCGCGAGTGTTTAATCGCTTTCCGGTTCCTGCAATTTCCGTGAATCGGTAGGTGTTTTTTTGAGGAGGTCAATCGATTTTAGATTTGAGATTTTAGATTTTAGATTGACCCCACGGATAAATGCTCTTTCTTGAGGATTTTCGATTTGAGATTTGGGATTGATTCCACGGATCGATCGCGTGGCGGATACCACCTTTGAAATTCTCGGTCAAATCTTTCGGCTGTATGGCTTGTGTGGCAAGGGTTTGAGCCTCAACGCTGAAAAAATCGATTCACGGAAACGCTGAAATAATTGCTGTGTATAGCTTTGATGGTTGTTGAAAATTTTGTCTCTTGACAGGGCGGTGGCTGAAATGATATTTTTTGGATGCTTGACGGAACTGTACCTTGAAAACTACATACTGTAATGCTTCTGGCACGGGCG # Right flank : CTTTCGGAAGTATTCAGGAAGTCCTGGACGCATCAACACCAAGAAACCGGGTTTTTTACGGTTTCTGGGGCTGTAACAAAGTATTTCGTGAAAAACCCGATTTCTGAGCACAGGTGAGTAAGTCGGAAGTATTGTTAAAGTGGGTTTGAGTTGCGAATTCGCCCGTTGTAATCAACTCTGATTCTGCCATCTTGGGAAACCGTAACAACAGTTTCTACAGTATAGACAGACGAACCAGGCTTGTAACCCTTAAAAGTAAAAGTCCAAGTTCCATCGCCATTGTCAACAAACGGCGATTCCTTAGAAGTACCGTGCATAGAAGCTTCAGCTCGATAGTTGCCTAAACCCCCGTTGGCAACTTCTGCTGCTTGACGGGCTAAGTTTTTTGCCCGATTGAGTTGGATATTATTGTTAATCACTGTCACGCCGTCGGTCTGATATTCAGGAGCAGGATTGCTCGAGGCGGGGGAGACTCCCACAGCTAAAGTTGAGAGCGCTAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAATCAACCTAAACCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 7 4984952-4977856 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 4984951 37 100.0 34 ..................................... AGAGAAAAATATCCCAAAATTCCCAAGACTATTA 4984880 37 100.0 34 ..................................... CTCAATGGTCGATAGAACCAATCAGTGCTGTCAA 4984809 37 100.0 36 ..................................... TTTAATTACAATCTGTTAATTTGGGCTGAACGGGTT 4984736 37 100.0 35 ..................................... TCTGGGCTGCGCTATCGGCTCAGACGAAATCTTGC 4984664 37 100.0 35 ..................................... TTGCCGATGTGCGGTCGCTGACCGCGCGGACGATA 4984592 37 100.0 38 ..................................... TGGAGGGGTATTATTGTCTGGACAAGTAGTAGAGGCTA 4984517 37 100.0 32 ..................................... TCATCTGATATACTACTAAAGTAATGTCTCTA 4984448 37 100.0 43 ..................................... TTGTACCCGATTTGATTCTAGCTGCTTTTTCACCTAGTATTAT 4984368 37 100.0 41 ..................................... CACCATTTTATCGAGTAGGTTAGCTGCATCATGTCGATCAA 4984290 37 100.0 42 ..................................... TTGAGGTATTACAACTTGTTCAGCGTGTTGTTCTTGCAACGT 4984211 37 100.0 42 ..................................... AAACAAAGGCATTTGGAAAAAAGCTGGATGTAGCATAGTCAC 4984132 37 100.0 36 ..................................... TTATGACTACTAAAAATCGGTGTTGAGCATTCTAGA 4984059 37 100.0 36 ..................................... AAGGCATCATAAGTTAGTAGATACACTCTAGACAAT 4983986 37 100.0 38 ..................................... TTAAGCTTTAGTGGCTCGTTCCCTTTCCTTATGTGACT 4983911 37 100.0 37 ..................................... TATGGGGTAAGGGTTCTGGGATGATGACTATAAGTAG 4983837 37 100.0 36 ..................................... TTAATTGCGCCTCTACAATAAAACCAGAACTCCCGA 4983764 37 100.0 33 ..................................... TAAATTTGTAGTTTTTGTAGGAGAAAAGCATTT 4983694 37 100.0 38 ..................................... TTAATTTTGCTCATGTCTAACATTGGACTGCGTTTTTT 4983619 37 100.0 43 ..................................... TAAAGTTTCTATTTGTTTGTCTATATGCTCTATTTGCTTCTTA 4983539 37 100.0 39 ..................................... GTTCTTCCTGACTGGCAAGCTCAAATTCCGAGCCATAAA 4983463 37 100.0 37 ..................................... AATCGGTCCCAATACTTCATGGTAGTTAATTTTGCGC 4983389 37 100.0 35 ..................................... TTAATGAAAGCTAAGGTAGAACAAGTAGGGGGAAC 4983317 37 100.0 42 ..................................... CAGAAACATCTGCAACACAAATTAAATCAAGCTGTTCATAAG 4983238 37 100.0 38 ..................................... GAAACACCATGATAACGAAGAAAATTAGGAAGTGGCGG 4983163 37 100.0 33 ..................................... TTCATAGAATTGCGTCATCGTCCGACTGGATAG 4983093 37 100.0 39 ..................................... ATTTCCACACGCAAGAAATGCGTACTTGCCTGATTTTAG 4983017 37 100.0 43 ..................................... AAACTAAATTACACGCATAAAAACGCTTGACACGCACAAATAA 4982937 37 100.0 36 ..................................... TGAAGGGATTAAAGCCCTTCCCAACTCATAATTTCA 4982864 37 100.0 39 ..................................... CATCTTCTCGAAAGCGCTCAAGCCGTTATTCAATTTTCC 4982788 37 100.0 38 ..................................... AAAACGTTCTGACCCCATAAACTCCTCAACCATAGCCA 4982713 37 100.0 43 ..................................... AAGTATTTTTGGGACTCCAACAATCCAAAGTGGAATGAGCTAG 4982633 37 100.0 39 ..................................... TTCAATCGAATACACGCAAGTCTGGCGGGACTCTACTCA 4982557 37 100.0 41 ..................................... TATGGCGTTTTGGGTAGACCCAGAGCTGGCAAAACAGTACG 4982479 37 100.0 50 ..................................... TAACTGCTGTTTTTGGTAAGCTGCCTGCGACTGCTGGAGGTCGGCGACAC 4982392 37 100.0 40 ..................................... TGCACAGATGGTGGGGAGTAAAAGCTTAACATTGTGTAAG 4982315 37 100.0 40 ..................................... TAGGTGCTGTCACATCTAAAACACCAACCGCTGTCGCAGG 4982238 37 100.0 40 ..................................... TGATACAGTAAATCGGGTAGTCTCCCACAAACCAACTCGA 4982161 37 100.0 34 ..................................... TAGAGTAATCCGGGCTGGGGCTTATCGTACCCAA 4982090 37 100.0 42 ..................................... TTGACGGATGGGTTATGTCGTTGTTGATAGTTAGATGGTAGA 4982011 37 100.0 34 ..................................... GATCGAGATCCTGCTTTCCACTACGACAACCACC 4981940 37 100.0 39 ..................................... ATAGCTAATATATCAGTTTGACGAGGATCACTTAATGCT 4981864 37 100.0 33 ..................................... TAATCACAGACACCGACTCATCAAGGATGACAG 4981794 37 100.0 35 ..................................... CTTGTATTTGGTGCGAGCTTGAGTGAATTGAGGGG 4981722 37 100.0 46 ..................................... AAATCAAGAGACTCCAGGGCTGAGGGTATCGAGGCTCGAATCATTT 4981639 37 100.0 34 ..................................... GAGTGATTTAAATACTTCGACTTGTACGCCTCTA 4981568 37 100.0 37 ..................................... CGCAAGTATCGCTTTGAGGGCGCATAAACTCTTTCCG 4981494 37 100.0 45 ..................................... CCGAATTCTTCCCCTTTTGCCGGCTTTGGGTAAGGTCGCTGATAA 4981412 37 100.0 37 ..................................... TGGTCGCGGCACACTCCCGAAGGGCTTAAGGCTGTGG 4981338 37 100.0 41 ..................................... GCTATTTTGATTTGTTGCCAGAGGTCGAGGGATGCGATCCA 4981260 37 100.0 33 ..................................... CCAAAAAAATAACACCAAGCGCCCCGCGTACAA 4981190 37 100.0 37 ..................................... TTTCCCTTCTACCACCTCCCAGGCGTTGCTTTGGCGA 4981116 37 100.0 34 ..................................... TTCCAAAGCCATTCAATCTGGCGGAATTCGGCGG 4981045 37 100.0 36 ..................................... AATTGTATTTTGCGACCAATTGGTCTGCCAACGTCG 4980972 37 100.0 35 ..................................... TTCATAATTTCTTCAGTGGTGGCTTTATGATTATT 4980900 37 100.0 37 ..................................... ATATTACATTGCTCCTCTCATAATTGAGCTGAGCCAG 4980826 37 100.0 38 ..................................... GTATGGAATTACCGAGCAATTGCACAATTTACGCTCTG 4980751 37 100.0 43 ..................................... CCGCCGCCGTGTGGGTGACAGTAGAAGGGATTGCCAGCGTAAC 4980671 37 100.0 35 ..................................... CCTAAATTCTCGTGGGGCTGACTAACTAATCGCAA 4980599 37 100.0 34 ..................................... GCTTCGTCTTGATTGAGATCTATCTGTCGTTCGT 4980528 37 100.0 37 ..................................... GTTTGACCCCTTAGTATATATATAATAATTATCTTCA 4980454 37 100.0 36 ..................................... GTGCAAGCTTGCTGATTATGCCTGCGTAATTTTTGA 4980381 37 100.0 36 ..................................... TTCTTTAATTTCATTCATTGAGATCAGATTACCAGC 4980308 37 100.0 41 ..................................... TAAGTGTTTCCGGCTGAGGTTTACCAAAACCTCTATTTCTT 4980230 37 100.0 33 ..................................... CCGCTCAAATTAGTGGAACACCCCGGAAGCCTA 4980160 37 100.0 40 ..................................... GGGCTGTGGTGCTGTTGAAACAGCCGGAGGATTGGGCCGA 4980083 37 100.0 36 ..................................... TTGTTGGTAGGAGCAGATTCGGACACCAGCAGTTTA 4980010 37 100.0 39 ..................................... TGGGCGTAGTTGTTGCAGTTCCCCTCGGCGGTGGTCCAA 4979934 37 100.0 36 ..................................... TGTGCTCTCGCGGGCTGGTGTGGGGGCTGTGGGTTT 4979861 37 100.0 38 ..................................... GCCCATTAAATTTGAAATTCGATACTTTGTCGTGGCGG 4979786 37 100.0 33 ..................................... CACCAATACTCCAGCCAGAAGGCTGCCAGTATA 4979716 37 100.0 36 ..................................... CAATCACAAGGCGATCGTAATATTCAATATCTTCAT 4979643 37 100.0 40 ..................................... TCGGGAATCAATTCTCAAAGACTGATGTGGAACAAAATTT 4979566 37 100.0 33 ..................................... TGCTAGTAAACTTTTCTCCAATTTGGAAATTAT 4979496 37 100.0 38 ..................................... TTGGAAAAACCTTATAGCATTGATAACCACGATATTCA 4979421 37 100.0 37 ..................................... ACAAACAACGGGAAGGATTTGATTTTGAGGCATCCAA 4979347 37 100.0 33 ..................................... CTCACTCGGAACATCAGCAACAGTCGCTTTGTT 4979277 37 100.0 33 ..................................... TTTGATTTTCATCCCCCCAGGTTTCCACCATTT 4979207 37 100.0 33 ..................................... CCTGCGCTAGCCCAAGCTTTAAACTCTGTAAGC 4979137 37 100.0 33 ..................................... AACGGGTACTTAAGCTATAAATGGACAAGCAGA 4979067 37 100.0 44 ..................................... TCACATTGTTTGATTTCTCTCAACGAGTTTCAGGCTAAAATATA 4978986 37 100.0 37 ..................................... AGGAAGCGTCGCTTCCGCCCGCGCCAATGACTTTTCA 4978912 37 100.0 39 ..................................... ATGACCTTGATTAATGGTGGTGCTTGCTGGTATCGCCCC 4978836 37 100.0 33 ..................................... CACCATCTCCGGTGTGAGGGGCCCGGAGTGATA 4978766 37 100.0 32 ..................................... CTCTCGGAAGAATTCAAGCTTTTCACCCTAGA 4978697 37 100.0 33 ..................................... AATTACCCGCCAGCCAAGAGCTTGAGCGGCTGG 4978627 37 100.0 38 ..................................... CCCCTAACAGCCGAAACCCCCCTTTTTAAGGGGGGTCG 4978552 37 100.0 34 ..................................... TAGAGCCCAATCCTTCAGCTTTAGGGCCTCATAG 4978481 37 100.0 34 ..................................... CGCACAGTTGCGATCGGCGCCAACATGGCTTTGG 4978410 37 100.0 39 ..................................... CAAACCGGGGCTACCCGGTTGGGAAATATACCGATTTTT 4978334 37 100.0 37 ..................................... GACTGGAAGTACCAATAGCCATCGTAAACGCTATATC 4978260 37 100.0 35 ..................................... ATCAAACTCAAGCCACGCCCAACTGACGCGGTACT 4978188 37 100.0 34 ..................................... AGGATAAGCTAACTTCCATGCGTCGGCGTGGTAG 4978117 37 100.0 38 ..................................... TAATATTTGCATTGATCCCATTTTGTGGCCCTCAGCTT 4978042 37 100.0 37 ..................................... TCTTAAAAAGGCTATGGCACTGTATGCGGGGTTTAAT 4977968 37 100.0 39 ..................................... TACAGCTTTTGGAAGGGTGAAAGCATAGTAAACCACTAC 4977892 37 78.4 0 C.......T...............C.......TTTTG | ========== ====== ====== ====== ===================================== ================================================== ================== 96 37 99.8 37 GCCGCAATCAAACTAAAACCCTATTAGGGATTGAAAC # Left flank : TTTCTGCTGTAGCTTGCAGCAAACTCTTGCCGCTACCGTCGAGACTCAAAAACTGCTTGGGGCGCTGCTTGCGGCTGAGAGGCCAGAAACGTTCGCCTTTACCGCCGGCGAGTATTACGGGAATTAAGGTTTTGGTCATGGTTTGAAGTTTAAGGGTTCTGATCTATTTTGCTCGACAGCTTATAATTATGGAGAGAATTGTGGCTGTCTGCGGGTGCTCGGAGCGATCGAACTACATTTTTTGCCTAGTTTCCGTGAATGGGTAGCTGTAAAAATCGGGGTATGAAATTTTTCGACTGGAACCCACGTGCAGCAACTGTTTGAGGCTCACCCTCTGAAAAAACGATTCACGGAAAGTCTGAAAGCTTTACAGGATAACGTTTTGGAGTGAGGATGAAAATTTGGGTATTGACAAGGCAAAGGCTGGAATGGTACTTTTGTTTTAGATTCACGGAACTGCACCTTGAAAACCAAATACAGCAAGGCTTCTGGAACGGGCG # Right flank : TCACCCGATCGATCCAGCTTGCATAAAATGATACCCGCGTGTCGCCGGAAATTTCCCCAAAACTGCCATTATCGTCAATTTTATCAATATCGCTGATGTTTGTTTTGAAAAATCCTCGATCGCTATAACCCCAAGAACTAATCCCCGCAATCTTCCCGTCAACAAACGAAGGCCCGCCCGAATCTCCGCTAGCCGTAGCTATCTCATTTTTTCCCAAACCGCGATCGCGCAACCTCGGAAAATGCCTCCCCAAAGCATCGTGTTCGCTAGTTCCCGCGTCAAAATCAAAGATTAATTGACTTCCCAAAACCAATTGCGACATATCTGATTCTGTAGCATCTTTCAAAACATCAATTAAAGCATCATAGCGATTCTGTCCGCTATACCTTTTCGCCTCAGAATTAGAATTTTCATCCTGTCCCTTTGCACCTAAACCAATATATCCGTATCCAACTTTTGTCAATACTTTACCCACTTCATTTTTGTTTCTATTTATCTCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATCAAACTAAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 8 6130856-6125699 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 6130855 37 100.0 37 ..................................... AACCGACGCTTAGGATTTAACCCAAACACACACCACA 6130781 37 100.0 36 ..................................... CACTTCAGGCGGCGAACCTCGGCAGTGGTTTGCTCA 6130708 37 100.0 33 ..................................... TCTCTTCAATTTCGTGGAAACTATGACCTTCAT 6130638 37 100.0 40 ..................................... ATGATATAGAAGACAACAAAAAACAGCAAGCGCTAAAAAC 6130561 37 100.0 34 ..................................... TCGATCGAGTGCGATCGAAACTCTCTAGTTTTAT 6130490 37 100.0 34 ..................................... ACGCTAGATACTTTGAGGTACAGTTTTTGCGCTT 6130419 37 100.0 36 ..................................... CCTGTTGTAAACACTGTAAACAGTTCCATTGCTCCT 6130346 37 100.0 37 ..................................... ATTCGATCGAGATTCCGAAATACGGATGCCTGACTTA 6130272 37 100.0 35 ..................................... ACAGCAGTAGCCAGTGAAGGAGTGGCTGCTTTGAC 6130200 37 100.0 38 ..................................... GCAATGCTGTTATTTTATCGACATCGCCTACGATGTGC 6130125 37 100.0 34 ..................................... GCCCAATATATTCACCTTGTGCTGAGTCAAATCC 6130054 37 100.0 38 ..................................... TACTCGCCACCCCCAAGCAATTGTTGCGGCTATAAAAT 6129979 37 100.0 37 ..................................... TTAAACATTATTTGCTTGTTTTAAAATGATTGATAGA 6129905 37 100.0 34 ..................................... ATTAGTGCCTTTGATGCTCAGACTTTTCTCACTT 6129834 37 100.0 36 ..................................... CTCGCCCGGAGATATCTATGAGCACGCAACTTTTGA 6129761 37 100.0 34 ..................................... TTTTTGGTGTGTGTAATTTAAACACAGGAGAAAA 6129690 37 100.0 36 ..................................... ATTGAGTTTTCGATGGATTGGGCTATGCAAGCTGCC 6129617 37 100.0 37 ..................................... TTTATTGAAACAAATATTAAATTAACTGAACAGCAAA 6129543 37 100.0 36 ..................................... CGACGGCTGTGCCAGACATCCACACGGTTTCTCTGC 6129470 37 100.0 39 ..................................... CATATTCTAACCTTAGATGAGTTAACCCAAAAATACAAA 6129394 37 100.0 37 ..................................... CTAGATATGAAAAATGCCCCATCTAGAATTTTTTCAA 6129320 37 100.0 35 ..................................... TTGATGAGGACAGAGGTAATTTAAAAGTTTTCAAT 6129248 37 100.0 33 ..................................... GGATTAGGGAGCCACTGAAACTAATCGGGCCCC 6129178 37 100.0 37 ..................................... TCTTCTATTCCTATCAATTAAGGTTACATTTGACTAA 6129104 37 100.0 44 ..................................... TTGATTGCGGCTACGTCGGTCGGTGCGATCGGCTCGGTCGGTGC 6129023 37 100.0 34 ..................................... TAGAGTAATCCGGGCTGGGGCTTATCGTACCCAA 6128952 37 100.0 35 ..................................... CGATCGGGCGGACTTTGTGGTGCGGATACCGCACA 6128880 37 100.0 38 ..................................... AATCGGTAAGAATTGCCCGGTCACCTTCCCCAGTACGC 6128805 37 100.0 41 ..................................... GCACAAAAGGCTGCACTCCAGCGGGAGCCATCTCCCGCCCC 6128727 37 100.0 41 ..................................... ATACCCAGTAGCTGCCGCGCTTAAGAATGCGCCTGGCCGAA 6128649 37 100.0 42 ..................................... AAACCAGGGTTTCGCTCCAACCAATCTTCCAAGCTTTCGAGA 6128570 37 100.0 34 ..................................... AGTCCTGCCACTGTCAAGAAATTTGAGGTAAATA 6128499 37 100.0 35 ..................................... GTCCTCTTAACTGCCCGTAAAATTTAGGGCATCCC 6128427 37 100.0 38 ..................................... CCAGTTTTTGAGCCGACAGATCCAGTATTTTGCCTTGC 6128352 37 100.0 33 ..................................... ATTAACTTCGGAGCCAGAAAATCTGGCCCAACA 6128282 37 100.0 34 ..................................... GGGCAAAAGTGCAAGAAGTGCGATCGCTCCTAGC 6128211 37 100.0 35 ..................................... TCGATTTTCAATGTGATGCTGTTTCGGGATTATTT 6128139 37 100.0 44 ..................................... CGAAGGAGCAAGAGGTGAGCGACCGACAGACAAGCTCCAGGAAA 6128058 37 100.0 34 ..................................... GGGTTCACTTCTTGACTAAATCTCACTCATTCGC 6127987 37 100.0 33 ..................................... CGGAATTACCGAACAAAAGCCGTTAAATTAGGT 6127917 37 100.0 37 ..................................... GCGATCGAGCAGCGCTTTTCAAAATCCGTAAAGTATC 6127843 37 100.0 36 ..................................... ACTTTTATAATTATTACGCGCAGCCAAGATAAGTGC 6127770 37 100.0 34 ..................................... TAGATTTTTTAAACCCTTTAGTCACCTCGTTTTT 6127699 37 100.0 39 ..................................... CAAAGAATTTGCTCCTTGCTTGTCACCTGGTTTAGATAC 6127623 37 100.0 36 ..................................... AATCCAACGGGGGGCGCGCATCCTACACGCGCATCA 6127550 37 100.0 38 ..................................... ACCGCCCGTGTCGCCTTTCGAGGCTTCTTTAGCGAAAA 6127475 37 100.0 34 ..................................... GCGGCAGTTCTTAATCCAACTTTTGGACAATTAG 6127404 37 100.0 33 ..................................... GCATCGGTGGTCGGTTCGTTAGCAAGAAAATTA 6127334 37 100.0 37 ..................................... CGGGCTCTGGTTCGTGGGCCTCGGCTGCCTTCGCTGT 6127260 37 100.0 37 ..................................... GAACCTTTGGCTGTTGTTGAATGGGTTGATAAGCAAC 6127186 37 100.0 34 ..................................... AGAACAAATCGCGTGAACTGCACTGTGAACCTGA 6127115 37 100.0 35 ..................................... GAAGCTCTCAAGGCATTGGTGCAAGCAGAGGAAGA 6127043 37 100.0 37 ..................................... CGGGCCGCGATGCGACGCTACGGACAATCGCAATCTC 6126969 37 100.0 38 ..................................... GTTGCAAAGTCTCGCGCCCAGGAAGCGCGAATCAATCA 6126894 37 100.0 33 ..................................... AGGGCGATCGCTTCCTCCCATTCTTATGAAAAA 6126824 37 100.0 39 ..................................... TAACCCTTTCTGCCTAGGGGGGAAGCGGTGCATATATTC 6126748 37 100.0 36 ..................................... TAAGGATTTAAAGTCCGCTGCAAGTTATCTTTTGAG 6126675 37 100.0 36 ..................................... AAACACTACCAGCCATCGCCCTTTAGCCTTCTGTAT 6126602 37 100.0 37 ..................................... TTTTGAGATGCTTGCGCCAGTAGTAAGAGTAAGTGCC 6126528 37 100.0 34 ..................................... CCCCATCGGGGCGGGGAAGTCCCAAGGAACGATT 6126457 37 100.0 33 ..................................... AATTCGTACCAGGCGAAGGCGCTTGACGCTGAA 6126387 37 100.0 33 ..................................... TCATTTAAATCGCGTGCAGTCACCTATCATTAA 6126317 37 100.0 39 ..................................... AAGAATCATCAGAAACATCAAATTGCGATCGACAATCAT 6126241 37 100.0 40 ..................................... AAACGGAGCAATCCTCCCATCTGGGAAAGCGCATCAGAAT 6126164 37 100.0 34 ..................................... GAATCGACCGACGAACCGCCAGACCCCGACGACT 6126093 37 100.0 33 ..................................... TAGGCGCCCAGATATCTGCTAAAAGGATTAATA 6126023 37 100.0 36 ..................................... GGCACGGGAAAAACTGCGCCAGACTAACCAGCTTGA 6125950 37 100.0 34 ..................................... AAGGAACCTTAGACATCTTTGGCAAGAGCACTCA 6125879 37 100.0 34 ..................................... TCAATACTTCCAACACTCTGATCGATTCCTGACA 6125808 37 100.0 35 ..................................... TGACAGTAGGTTTCAAAGCTGCGATATCCCAGTGC 6125736 37 86.5 0 ...............TTT...C.......C....... | T [6125711] ========== ====== ====== ====== ===================================== ============================================ ================== 71 37 99.8 36 GCCGGAAAAAACCTAAAACCCTATCAGGGATTGAAAC # Left flank : GTTGAGGAGCTCGATGCAGGCTCGGACTCAAGTCTAAGTTACGATCGCCCCGCCGAACAAAGTTATCAAACCGGTTGAGGAGATTGATGCAGGCTAGGACTCAAGTCTAAGTTACGATCGCCCTTGAAGAAAGTCATCTAACCCAAGGAAGACAGTATTTGGTTTTTTCCGCTGTACGCTTGCTGTCAGGGTAAGATCGAACGCATTGGTGGGGTAGTGCCAGTCGATCGCACAATATTTTTTGCTTAGTTTCCGTGAATCGGTAGGTGTTAAAATCGGGGTATCAAATTTTTAGGCTCAAACTCATGTCCGGCAAGAGTTTGATGCCCCCAACCTGAAAAAACGATTCACGGAAAGTCTGAAAGCTTTACAGGATAACGTTTTGGAGTGAGGAAGAAGAATTTGCTATTGACAAGACCCAGGCTGGAATGGTACTTTTGTTTTAGATTCACAGAACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGGAACGGGCG # Right flank : GTCCAACCTACAAAATGATTGGCTCAAAAATAGACCTCTCCTCTCTCTTTTTATCTCCTCCCATAACCTCAAGCAATCGATCGACTACACGCCTCCAAGTAAAATTTTCAGCCACAAAAGCCGGGCCCGCAACCCTCGCTTTCGCAGCGATTCCAGGCTGTTCGATCGCCCTTTGCATCAAATCAGCCAAATGTTCCCACTCAGGAGCTAAGATAAATAAGGTTTCCCCGTCACTCGCCACAGCCGTAAATTTACTCTCAATCCGCATTGCAAAGTCCGATCGCGTAAAATCATCCGTAGGGCCACCTGCAGTGCAAATAACCGGCAAACCGCAAGCTGCTGCTTCCAACACCGGCAGATTAAAACCTTCTGCCAAATAGGGAGAAACATAAACATCTGCTGCTTGGTAAAACTCTGCTATTTGAGCAAAAGATAGCTGGCTACCAGTATAAATTAATCTCGGTAAAACCCTCGCTCTTTCCGCACCGTTGAGCACAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAAAACCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 9 6577718-6579210 **** Predicted by CRISPRDetect 2.4 *** >NC_019729.1 Oscillatoria nigro-viridis PCC 7112, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 6577718 37 100.0 35 ..................................... TCAACAGCAGCACCGCAGCCCAACAGCTCCAATCC 6577790 37 100.0 32 ..................................... TCTGCAACGTATTTTTCTGCTAATCGAAAACC 6577859 37 100.0 33 ..................................... CGCTCCTTCAATTCCAGATGTAAAATTATCGGG 6577929 37 100.0 33 ..................................... CAATATCATTTTTAGAAATATTGGAAATATTTT 6577999 37 100.0 38 ..................................... GCAATTCAGCAGGTGTGCCAGCTAATCGATAAAATTCG 6578074 37 100.0 45 ..................................... TGACGAAAGTTTGGCGAAATATTCTCAGGCTCACGCCGATCGCAT 6578156 37 100.0 33 ..................................... GCAATTCTGGTAAACCTACCAAGCGGCATTTGT 6578226 37 100.0 34 ..................................... TTGAACTCAATCGCGCCGCTGGGTTCTGACTCAA 6578297 37 100.0 36 ..................................... ACGCGAGCGCCACATTCGTAACGGTTGTCGTCGAGC 6578370 37 100.0 41 ..................................... TGGAAAAGTATTTTTAGATTAAGATGTACGGTGCTCTGAAA 6578448 37 100.0 36 ..................................... TGAGCAAATAAATCACTTCTCAAACACAGAATTTTA 6578521 37 100.0 34 ..................................... TATCCCTGACGGTAACAGTTGGTCTGTAACAGTT 6578592 37 100.0 33 ..................................... ATCTGCAATTCCAATTCACTTTACCTAATAGGA 6578662 37 100.0 33 ..................................... TTTCCAGCCTCGGATAACTGATTCTAGTAACTC 6578732 37 100.0 37 ..................................... TACCTTCACTTTGTACCAATCTTTTGATTTCCAAAGC 6578806 37 100.0 34 ..................................... TTGCCAAGCATTGATAGCAAAATCGTCCTTGAGG 6578877 37 100.0 34 ..................................... TTCATAGATGTGGAATTTGACGTTTTCCATGAGC 6578948 37 100.0 42 ..................................... TTCCGCTCTTCGCAAGTTGGTAGATGATGTCGCCACACCAGA 6579027 37 100.0 35 ..................................... TTTTCCTTATTGATGTTAACACGCTTACAGCTAAA 6579099 37 100.0 38 ..................................... CTTATGATGGAACGGTTAGGCGGATCAAATTCACTGGC 6579174 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 21 37 100.0 36 GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC # Left flank : TCCGAAGACAAGCGCCGGATAAAGATTCACAAAATGCTCAAGTCTTACGGGCAGTGGATGCAGTACAGTGTGTTCGAGTGTGCTGATTTGAGCGAGACTCAGTATGCTAAGTTGCGATCGCGCCTGAACAAAGTCATCAAACCGAACGAAGACAGTATTTTGTTTTTCCCGCTGTGCGCCTGCTGTCAGGGTAAGATCGAACGTATTGGTGGCGTAGTGCCAGTCGATCGCACAATATTTTTTGCTTAGTTTCCGTGAATCGGTAGGTGTTAAAATCGGGGTATCAAATTTTTCGGCTCAAACTCATGTCCGGCAAGAGTTTGATGCCCCCAACCTGAAAAAACGATTCACGGAAAGTCTGAAAGCTTTACAGGATAAGGTTTTGGAGTAAGGAAGAAGAATTTGCTATTGACAAGGCCCAGGCTGGAATGATACTTTGGTTTTAGATTCACGGAACTGCACCTTGAAAACCAAATACAGCAAGGCTTCTGGAACGGGCG # Right flank : CTTCGCAGCTATCCATCTCCTTACTCATCTCTTTGGCTAGAAACAAGTTTACTTCCAACACTTGTCACAGCACAGGTGGTGGTCATGGATCATCTCACATTTGATAAAAGTGGTCGGATTCAGGAATTGATTCAAACAGCAGGGTGTAGACTATTATATTTACCGCCATACTCTCCAGAGTTTAACAAAATTGAACAAAGAAGAGTCTTGGCTAAAAAGTCAAATTCGTAAACAGCTTGATGAGTTTGATTGCTTACATTTTGGCGACCCTTGGATGTCTTGCGCCTTGCATCCTAACACGAGCCGTTGCTATATGTGATTTCCCAGATTCTTCAGTTGAGAAAACCTCAAAATTATGACCACTCAAACAACTTCTCCACTCCTACTCAGTCCCTTCAAAATCGGAGATTTACCCTTAAAAAACCGGGTACTCATGGCACCCATGACCAGATCCAGAGCCGGTGAAGCGCGGATGCCCAACGCCTTGATAGCAGAGTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGAAATAAACCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //