Array 1 74157-75084 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNN01000011.1 Pseudomonas aeruginosa strain PA16 NODE_11_length_83389_cov_35.681643, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 74157 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 74217 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 74277 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 74337 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 74397 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 74457 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 74517 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 74577 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 74637 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 74697 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 74757 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 74817 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 74877 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 74937 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 74997 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 75057 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1309-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNN01000300.1 Pseudomonas aeruginosa strain PA16 NODE_300_length_1365_cov_49.248447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1308 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1248 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1188 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1128 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1068 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1008 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 948 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 888 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 828 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 768 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 708 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 648 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 587 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 527 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 467 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 407 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 347 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 287 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 227 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 167 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 107 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 47 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTGTCTCTTATACACATCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 922-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNN01000313.1 Pseudomonas aeruginosa strain PA16 NODE_313_length_922_cov_50.756213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 921 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 861 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 800 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 740 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 680 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 620 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 560 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 500 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 440 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 384 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 324 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 264 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 204 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 144 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 84 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : ATGCAGGTCATAGGCGTATTCGAAGGACAGGCTGTTCACTGCCGTATAGGCAGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 437-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNN01000046.1 Pseudomonas aeruginosa strain PA16 NODE_46_length_44735_cov_34.468695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 436 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 376 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 316 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 256 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 196 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 136 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ATGATCACCCAAGCGTGCGTATCGCGGCCATCCGTTCACTGCCGTGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24774-25221 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNN01000098.1 Pseudomonas aeruginosa strain PA16 NODE_98_length_25269_cov_34.013576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24774 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 24834 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 24894 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 24954 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 25014 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 25074 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 25134 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 25194 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : TCCGGATCACCAGGGCGACAGATGGCCACCTCGTTCACTGCCGTATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //