Array 1 519168-520525 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822020.1 Streptococcus thermophilus isolate STH_CIRM_956 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 519168 36 100.0 31 .................................... ACGAGCCTCTGAGAGCCTCTCAGAGCTATCT 519235 36 100.0 30 .................................... CCTATGATGAAATGTTACTGACAAGAGAAA 519301 36 100.0 30 .................................... ACGGGAGTTGAAAAGATTTATCAATCAACA 519367 36 100.0 30 .................................... TTTTAAATATGGAAAAGATGGATTGTATTT 519433 36 100.0 30 .................................... TTGGGCGGTTGGGTTTCTTTTTGTTTACTT 519499 36 100.0 30 .................................... CAATAATTCCAAAAGCACTAGAGAGAGTAT 519565 36 100.0 30 .................................... GCGTAGATTTTCAAGAATGTTATTACTATC 519631 36 100.0 31 .................................... CCTAAAAAACGGTGAAAATCGTTCTCGACAA 519698 36 100.0 30 .................................... TTTCAGAAAGTGAAGCCTTGTGGCTAACGC 519764 36 100.0 30 .................................... TTTAAAGCGTCCGAATGTTAAGCCAAAATA 519830 36 100.0 30 .................................... ATTACTTCTTGGGTCAATAATTTTATTTCT 519896 36 100.0 30 .................................... TTGTGGTAGCGGTAAAGGAAAAAACAAGAC 519962 36 100.0 30 .................................... GAATAATAAAGTGTCAAAAAACAACAAGTT 520028 36 100.0 30 .................................... AAGCATGGTCGTCAATTCGCAAGATAGCTT 520094 36 100.0 30 .................................... TTTGACGTGTGCCACTACCCCTTGTAGTTA 520160 36 100.0 30 .................................... TAAAATCGATATTTCTCTAACCTTCCACGG 520226 36 100.0 30 .................................... TATTTTGCTAAAAAACCAACGCAGATTTTT 520292 36 100.0 30 .................................... TAGAGGTAATGACGGACTGCCTGGCAAGGA 520358 36 100.0 30 .................................... TAACGCATTGACTAACTGGGTGACAGCTCT 520424 36 100.0 30 .................................... ATATCCTTGTGTTCTTTCATGGTTGTGTAA 520490 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTACTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1022065-1021813 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822020.1 Streptococcus thermophilus isolate STH_CIRM_956 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1022064 36 100.0 37 .................................... AAATGATAGTGTGGTTTTTTAAATCCACCATTCTTTG 1021991 36 100.0 35 .................................... CAATCCACAATCTAATGCGATACCCACGGTAATTA 1021920 36 100.0 36 .................................... TGTCCGCTGGATATTTATCGCTTTAGTAATTTTCAT 1021848 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATTGAGGGTTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCATAAGATATGGG # Right flank : TGATGATGCAAAAAGAAGTAGCGGACCGTATCTCAGCAGAACCAAATACCAAAGCTTACGGTTCACTTTCAATTGCGGTGCAATACTACATGACAGCAAAAATTGCTTTCATCGTGCCACGTACAGTCTTTGTGCCAGCGCCGAACGTTGATTCAGCCATCCTCAAGATGACCCGCCGTGAACAACCACTTGTTCAAGTTAAAGACGAAGATTTCTTCTTCCGCATTGCTAAAATCAGTTTTGTTCACCGTCGTAAAACCCTTTGGAACAACTTGACAAGTCACTTCGGGAAGTCAGAAGAGGTCAAGACCAAATTAGAAAAGGCTCTGGAAGCAGCTGGTATCAAGCCGTCCATTCGTGGAGAAGCTTTATCTATTGCCGATTTTGCAAGATTGGCGGATGCCTTAAAAGAAGTCGGATTATAATGAAGAGACCCCAGCCATTTATTGTGGTTGGGGTTTAAAAATCTTTTAATAGCTTGTCTTTGTAATAATTAAAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1298547-1297323 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822020.1 Streptococcus thermophilus isolate STH_CIRM_956 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1298546 36 100.0 30 .................................... TAATACCTAGGTAACTCATATAATCATCTA 1298480 36 100.0 30 .................................... GACAATGTCCAACCAGTGTCCAACAGAGAT 1298414 36 100.0 30 .................................... TCATTCGGCAGACAATAAATATCATGACCT 1298348 36 100.0 30 .................................... GACCTTGACACAAAATCCAGTAAATATTTT 1298282 36 100.0 30 .................................... TGGCATACGGAAAAAGTAGATACAACTCAT 1298216 36 100.0 30 .................................... TCTAACGGTCAGCACATCTCCAACGCGCTT 1298150 36 100.0 30 .................................... TTCATTACTGAAAAACCTATAAATTTTTTA 1298084 36 100.0 30 .................................... GGTATCACTTGGCGTTAATGAAATATCTGG 1298018 36 100.0 30 .................................... CATGCATCCGACATCCCAGATTCAACTAAG 1297952 36 100.0 30 .................................... AGTCGTGCCTTCATAACAGTCTAATTCTGT 1297886 36 100.0 30 .................................... ACTCTTGAACAGCTACCAGACGAAGACTTA 1297820 36 100.0 30 .................................... TACATAACTGAAGACGAATATCCAAATAAT 1297754 36 100.0 30 .................................... AAAGCCTATAACGACTTAAATAACAAAGCT 1297688 36 100.0 30 .................................... TTAGGGCTAACGCTTCCGATGTCTCTTTCT 1297622 36 100.0 30 .................................... AAGACCGCTGTACTGGTTGGTATTCGTACC 1297556 36 100.0 30 .................................... AAGATTTCAGTCTTGAAGCTGAGTACATTA 1297490 36 100.0 30 .................................... AGCTACATACTATGTTAAATTAAGACAAGC 1297424 36 100.0 30 .................................... TCCGAGCTGACCACGTTAGATCAGTCTTTG 1297358 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //