Array 1 3515878-3515609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRRH010000001.1 Enterobacter hormaechei strain MGH220 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3515877 28 100.0 32 ............................ CTGCTTACGCGCGGATACCGCCTGGGCGTCAT 3515817 28 100.0 33 ............................ CAGGTCTTGTTAATGATGCTGTAGCCCATCTGA 3515756 28 96.4 32 ...........G................ TGGCTGTCGGTGTACGAGTTGGCATCGATAAG 3515696 28 100.0 32 ............................ TTTCCCGATATTCCTCAGCGATCCGCTGCGCC 3515636 28 75.0 0 ............A.......TAGGC.C. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 94.3 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : AAAAAAGGGTCTGGAGGAAGTTTTTGAGGTATTGGTTTATCAGACAAAGGGATAAGTGTAGATTGTTTCAGTTCACTGCCGTGCAGGCAGCTTAGAAATCTACCCGCACGAAAGAAGAGTCTATCGTCAAGTTCACTGCCGTGCAGGCAGCTTAGAAAATCAGCATAATCACCACCGATCAGATTGTAAGGTTCACTGCCGTGCAGGCAGCTTAGAAAACAGTGAAAGATGGCGCTGTTAAACGCTACAGGTTCACTGCCGTGCAGGCAGCTTAGAAATTTGGCCACGCGGTTTGCCTCCGCCAGCACCTGGTTCACTGCCGTGCAGGCAGCTTAGAAACTGCTTACGCGCGGATACCGCCTGGGCGTCATGTTCACTGCCGTGCAGGCAGCTTAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATGTAGGCCGGGTAAACGTAGTGCCACCCGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGTTCCAAAGGCAAAAGCGCTGGCCTGCACGGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGGTTACAAAGGCATATGCGCTGGCCTGCATGGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGAGTTTCAAAGGCAAATGAGCTGGCCTGCACGGACAAAAAAGCCCGGTGGCGCTGATGCTTACCGGGCCTACAGGTGAACCACGACAGATTATGCGAGCACAAGATCGCCCTGCGGATGGCACGAACATGCCAGCACATAGCCCTCCGCGATTTCCGCGTCGGTCAGCGTCATGGTGCTGGTGACCGTGTACTCACCGGAAACCACTTTGGTCTTACAGCAACCGCACACCCCGGCGCGACAGGCCGCTGCCACCGGTACGTTGTTGCTTTCCAGCGCTTCAAGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3516308-3515979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRRH010000001.1 Enterobacter hormaechei strain MGH220 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3516307 28 100.0 32 ............................ TCTACCCGCACGAAAGAAGAGTCTATCGTCAA 3516247 28 100.0 32 ............................ ATCAGCATAATCACCACCGATCAGATTGTAAG 3516187 28 100.0 32 ............................ ACAGTGAAAGATGGCGCTGTTAAACGCTACAG 3516127 28 100.0 33 ............................ TTTGGCCACGCGGTTTGCCTCCGCCAGCACCTG 3516066 28 100.0 32 ............................ CTGCTTACGCGCGGATACCGCCTGGGCGTCAT 3516006 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CAGGAACCTGCACAGACGGCGAGTTCACCCGTAAGCTGCGCTTCGGCACCGGCGGCAAAGGCGGCGACTTCTTCATGGCGGGTGGGCATCCACTCAATAGTTTTCATCTTGTTAAGGCTATCGCTGAGTCCGTTCAGAGAATCGCCAGTGACGCCCCAGATACGCTTTACGCCAGCCTGCTCAAGGGTTTTCGCTATGTATGCAGCCACGGTTTGTTTCATGGTTGTCCGTCTCCTTTATGTGATATCGCTTACAAGCTTAGAAGAAAGTCGCTGTATTGCCTGCTCAGTATTCCTTAAGTACAGGTGGTTTTTCTGCGCGACGCGCCGCCAGCGGGCTGAGGTTGGGGCGGGCGGAAGCGGGTTTGCAGACCCTTTTTTCCTGATGATGCATAAGTTATTGATTTTATATGGTTGGGCTGATGGGGAATAAAAAAGGGTCTGGAGGAAGTTTTTGAGGTATTGGTTTATCAGACAAAGGGATAAGTGTAGATTGTTTCA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGTGCAGGCAGCTTAGAAACTGCTTACGCGCGGATACCGCCTGGGCGTCATGTTCACTGCCGTGCAGGCAGCTTAGAAACAGGTCTTGTTAATGATGCTGTAGCCCATCTGAGTTCACTGCCGGGCAGGCAGCTTAGAAATGGCTGTCGGTGTACGAGTTGGCATCGATAAGGTTCACTGCCGTGCAGGCAGCTTAGAAATTTCCCGATATTCCTCAGCGATCCGCTGCGCCGTTCACTGCCGTACAGGCAGTAGGCACAATGTAGGCCGGGTAAACGTAGTGCCACCCGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGTTCCAAAGGCAAAAGCGCTGGCCTGCACGGGCAAAAAGCCCGGTGGCGCTGACGCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //