Array 1 73057-71305 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDIT01000020.1 Lacticaseibacillus paracasei strain LC-Ikematsu, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73056 36 100.0 30 .................................... CTTTGATTATATTCAGCGCGATATTCAAGC 72990 36 100.0 30 .................................... GAATTTGAGGAATCGGCACCATCAGTCACT 72924 36 100.0 30 .................................... AAACGCGCACGTATGATAACGCGCAAGGGC 72858 36 100.0 30 .................................... CAGAACATTCATTGTGGCCCACAGTAACCG 72792 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 72726 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 72660 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 72594 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 72528 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 72462 36 100.0 30 .................................... AAAGCGTTCGCTTTGATATATCAAAATTAG 72396 36 100.0 30 .................................... TCAAGATAGACCCCGTTAAATTGGGTGAAT 72330 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 72264 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 72198 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 72132 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 72066 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 72000 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 71934 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 71868 36 100.0 30 .................................... GAGTTTTAAGGTGATCAGAATGTATCGAGA 71802 36 100.0 30 .................................... AATTCTTGACCCCATGATTGAGACGTATCT 71736 36 100.0 30 .................................... TTCGTTGATGAGATGATCGAGCATAAACAA 71670 36 100.0 30 .................................... CAATGCCGGGGGTCCAACCATAGCCTGTGT 71604 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 71538 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 71472 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 71406 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 71340 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //