Array 1 99-848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CUYA01000037.1 Pseudomonas aeruginosa isolate 2.5% 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99 28 82.1 32 T...GAG..A.................. TACAGCTTCGAGGCTTCGGCGACCGCTTCCGA T [107] 160 28 100.0 32 ............................ TGGCAATGCGACAAGTCGTCGAATCAGCGCTC 220 28 100.0 32 ............................ ATTGATCAGCAGGCCGGTATTCGGTCCCATAT 280 28 100.0 32 ............................ ATCAGGCCGACGCCCTGCTCAGGAGTGGCCAC 340 28 100.0 32 ............................ GTTCACCACCGGACTGCCGCCTGGGTTCAGCG 400 28 100.0 32 ............................ TCTGACTTGGATGTTGTGGCCCAGCCACTGCC 460 28 100.0 32 ............................ ACGAAGGACTCAACATCCGCGATGCGGTTCCC 520 28 100.0 32 ............................ TGTCCGGCCTTCTCGCCGTGCTTCCTGACGAC 580 28 100.0 32 ............................ ATCAGCCAGAGGCTGTCCGATTTCGGGAAGGT 640 28 100.0 32 ............................ CGGAGGTCGGACATCATCGGACGCTTGTTCGG 700 28 100.0 32 ............................ GTGCCGAGTGCCCGCGGTCGAGGTGCCGGCCT 760 28 100.0 33 ............................ ATTCTGGACACCACTGAATTACTGCGGTGCCCT 821 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTT # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11321-9373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CUYA01000037.1 Pseudomonas aeruginosa isolate 2.5% 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11320 28 100.0 32 ............................ ATTCGATGGCGACCAGGTCTGGTGAGGTAGGC 11260 28 100.0 32 ............................ TGGTGACGTGGCGCGCATTTGTTTCATGGCGC 11200 28 100.0 32 ............................ CGCCAGCTCGCCTCGTCCATCCGCGTGCGGGC 11140 28 100.0 32 ............................ TGGACGGGGCGGACCAGGTCCAGGCCGCTGGC 11080 28 100.0 32 ............................ TCCAGGGCGGCGAAACCCAGCGGCGGCGACGC 11020 28 100.0 32 ............................ AGAACCGAATTGCACGCTGGTGGGCAACGGGC 10960 28 100.0 32 ............................ TCCAGATTGCTGGTGAAGCGCAGCCGGACGAT 10900 28 100.0 32 ............................ GCGCCGGCCCGGCCGCAGCGAACAGGCGCCGC 10840 28 100.0 32 ............................ GTACTTCACCATCCGCAAGGAAGGCTGGGGCA 10780 28 100.0 32 ............................ GTGAGACAAAAGTCGGGTATCACCTATACCCG 10720 28 100.0 32 ............................ CGCACGCAGCCAGGCTCGAACATCGGCCCGGC 10660 28 100.0 32 ............................ TTCGCCGGGTACGCGCTACCGTTGATGCGGAA 10600 28 100.0 33 ............................ CTACTGATCAACGGCGCACCCGGTGAGGGGCAC 10539 28 100.0 32 ............................ CTGGAGCTGGAACTGCTCGATGCTGGTATCGA 10479 28 100.0 32 ............................ AAACTAACGCCCTGCAGGATCCCGGCCGGCGG 10419 28 100.0 32 ............................ AAATAAAGAGTGCCTTTCTTGCTACTGATCAA 10359 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGACAAGTAATG 10299 28 100.0 32 ............................ TTCTGATAAGTCGCCCAGTGGTTCTAATAGCA 10239 28 100.0 32 ............................ AAGTACCTCGGCGGCAGCGATGTCGCCGGCAT 10179 28 100.0 32 ............................ ACCCGAACACATCGCCGACCCACGGCGTGCCC 10119 28 100.0 33 ............................ TGCATGAACTATGTGGAGAACGGGGCGTTCGAT 10058 28 100.0 32 ............................ ATCTTCGCCAACCTGTGCGACCTGGCACCGGA 9998 28 100.0 32 ............................ TGGCTGTATACCGTTTCGTCCACCGCTTCGAA 9938 28 100.0 32 ............................ TAGTTCTTCGCCAAGCCGGAAACCGAGGCCGT 9878 28 100.0 32 ............................ GACAAGGACCGTCGCGACAAGACCGAACCCGA 9818 28 100.0 32 ............................ CAGCACAAAGAGCAGGGCGGCAAGCCCGAAAA 9758 28 100.0 32 ............................ TCCACGGTCGGCTCGACGTACCAGTCGGGGCG 9698 28 100.0 32 ............................ TTACGGTGCGGCAATAACGAACCCCGCTCCGG 9638 28 100.0 32 ............................ TGGACGACTCGACGCATGACCAGGTCCAGGAC 9578 28 100.0 32 ............................ TACCACCACATGGCGGTCGGCATCGAAATGGC 9518 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9459 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 9400 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGAAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110-2237 **** Predicted by CRISPRDetect 2.4 *** >NZ_CUYA01000041.1 Pseudomonas aeruginosa isolate 2.5% 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 110 28 100.0 32 ............................ CCGAGCCATAGGTATTCAGCGTCGCGGTACGG 170 28 100.0 32 ............................ TTGATCACCGCGCCATTGAGCTTACCGTTCGC 230 28 100.0 32 ............................ TTCGGCAAGGACAAGGTTCCGGGCTTTGACGA 290 28 100.0 32 ............................ CCTGAGGTAATTCATATGCTCGCTCTTATCGG 350 28 100.0 32 ............................ TGGAAGCCTTCGCCCTGTTGGCCCTTGCGGCC 410 28 100.0 32 ............................ TTGCAGAAACTGCATGGGGAGCGAGCGAACAA 470 28 100.0 32 ............................ TCAAAGGCCGCGAACAAATCGCCTGTAACCGC 530 28 100.0 32 ............................ TGCAACCGTGGGTCAGACATGACCCGAGCAGA 590 28 100.0 32 ............................ CTGGGCAAGCGCGGCGTTAAGAAGGCCTAAGG 650 28 100.0 32 ............................ TGGCTCAGCGGGATGTTGTTTGCCCACCGCCG 710 28 100.0 32 ............................ GTGTCGACAGGGTACCCTTCGAATACTGTTAC 770 28 100.0 32 ............................ AGTCGACTTCTACGGTCTGCCACCCCTTTGAC 830 28 100.0 32 ............................ CCCTCGGAGTTCGAGGTATCAACGGTGATGCG 890 28 100.0 32 ............................ ATTGCGAAGGCACAGCGCGGCTTCTGCGATGT 950 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 1010 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 1070 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 1130 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 1190 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 1250 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 1310 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 1370 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 1430 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 1490 28 100.0 32 ............................ ACGCAAAGCCTGTCGGATGCGGTCAAGTCCGG 1550 28 100.0 32 ............................ TTCTTGAGTACGGCGACCAGTACGGTTTTTGG 1610 28 100.0 32 ............................ GACGAGGAAACCCGAAACGCCGTCTCCAGCCT 1670 28 100.0 32 ............................ AGTACCACGTCGACGCTGTGCATCTGCATCGT 1730 28 100.0 32 ............................ AGCATCACCCAAGCCTCATCGAGCGACAGCAT 1790 28 100.0 32 ............................ TGAACGGAATGCCTTTGCTCGGCAGCGAGGCT 1850 28 100.0 32 ............................ AACGGCGCCGGGGTGGTGGTGGCCTATCCGAT 1910 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAACATCGACGG 1970 28 100.0 32 ............................ TTGGTGACGTCGCTGACCACCCTGATCGGCGC 2030 28 100.0 32 ............................ ATGGTGGTTGCCGTCTGCGCCCTGGTGGCGTT 2090 28 100.0 32 ............................ AGCACGCCGGTCGCGATGGTCGAGAAATCGAC 2150 28 100.0 32 ............................ TCCTACGCCTCTATCGTGAAGAACATCATCGT 2210 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //