Array 1 76332-77489 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CDCJ01000012.1 Streptococcus agalactiae strain Mother7, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     76332	    36	 100.0	    30	....................................	GACAAGTTATTTATCAATCAGACAGCCGTA	
     76398	    36	 100.0	    30	....................................	GGCTTTTGACGTTATTTACATGTCCCCTGC	
     76464	    36	 100.0	    30	....................................	ACTTCATTGATGTTTTGTTCAAATTTCTCA	
     76530	    36	 100.0	    30	....................................	TACCGTCTGCACCATTTCGACTTCCAAGCA	
     76596	    36	 100.0	    30	....................................	TGCTGAATAATAACAGTTTCTGTTATTTTT	
     76662	    36	 100.0	    30	....................................	AAATATTCAGCTTGTCCGACATGTCTTTCT	
     76728	    36	 100.0	    30	....................................	GGATGATTTCGATTATGCGGCGGTGGTTGA	
     76794	    36	 100.0	    30	....................................	AAATGTTAATTTCATATCTACATCTTGTTC	
     76860	    36	 100.0	    30	....................................	CAAACTATCTTGATTATAAGTGGACTGATA	
     76926	    36	 100.0	    30	....................................	ATTTTTACACGAGTGCTAGAAAACGGGGCA	
     76992	    36	 100.0	    30	....................................	ACATTTGTTAAATTTGAACTTACTGGAAAT	
     77058	    36	 100.0	    30	....................................	TCCAAAACAAATACGAATGCTTGAGCGATA	
     77124	    36	 100.0	    30	....................................	GATTACCTTAGATGATGTTCTAATCGGTAA	
     77190	    36	 100.0	    30	....................................	CAAATTACAGTTTCGACTGATTATGGAAAT	
     77256	    36	 100.0	    30	....................................	ATATGTTCCACTCTATGAATTTAGGCTCAT	
     77322	    36	 100.0	    30	....................................	TTTTTACCAATGCTTCCATATCGCTTATAT	
     77388	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA	
     77454	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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