Array 1 44910-39624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQW01000065.1 Methanosarcina mazei strain 1.H.M.2.3 scaffold14_1_size82983-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 44909 37 100.0 37 ..................................... TAAAAAACCTAATGATATTCATGCCACCACGACACGG 44835 37 100.0 36 ..................................... TAGAATGGGTACTAACAATACTGATAGTTTTCACAC 44762 37 100.0 36 ..................................... TCAGGAAGAGGGGTTCACTCATGCTCCTGTTATTTA 44689 37 100.0 34 ..................................... ACATATTGAGAATATTGTGCTCTCCGTAAATAGT 44618 37 100.0 35 ..................................... TAGACCGACTCTGTTTTCACGACATCCGTGTCAAA 44546 37 100.0 39 ..................................... AACAGTATCGGATACCGTTTTTGTTTACGCTCCAATCGT 44470 37 100.0 37 ..................................... TTTTTAGTAAGTATCATGCTTTCAGGGAACAATTCAA 44396 37 100.0 36 ..................................... TGAGGGGAAAAAAGAGAATATCCAGAGAGCTCAGGA 44323 37 100.0 37 ..................................... AAAAAAAGAAATTAGTGTCCCATCATCTCAATTCTCA 44249 37 100.0 36 ..................................... AATTTGTTGATGAAATCCCAAGAGGAATAACAAAGT 44176 37 100.0 36 ..................................... GCTCTCTTTTTGGGGTCCCTCAAGAAATTCAATACC 44103 37 100.0 35 ..................................... CCCGTTCCTGTACCTGCTTCTATCTCTACACTCTC 44031 37 100.0 35 ..................................... TATACATCTTACACCAACGCGTAAGATAAGTTTTA 43959 37 100.0 36 ..................................... CCAATTCCATTCTCTACACGATCCATGTTTTCAGGT 43886 37 100.0 37 ..................................... TTGACATACAGTTAAATAAGACGTTTAAGTATATTAA 43812 37 100.0 35 ..................................... CCCGATTCATAAAATAATTCATTAATATATATTTC 43740 37 100.0 36 ..................................... AACATTTTATTCCCTCCAAGACAATCCAGCATCGAA 43667 37 100.0 34 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACT 43596 37 100.0 35 ..................................... TAGTATTAAGTACTAGTACTAGTACTTAGAAGAAA 43524 37 100.0 36 ..................................... AATATTTTGTATGCATTTATGTATACAACATGCCAA 43451 37 100.0 36 ..................................... TTGAATATCCAACCACAAACCACACATTCAAATCCC 43378 37 100.0 36 ..................................... ACTTTTTTCTGCGAGGTATGAACATGCCTAAATATC 43305 37 100.0 35 ..................................... AGCGATTCCGCGATTGATTCAAAAGCAGTTAATAA 43233 37 100.0 39 ..................................... CAAGTATAGCAGCCCATCTCGTTTTCTTGAACGCGAATG 43157 37 100.0 35 ..................................... TATACTGCATCCGAGACAATGTTAATAAGTATAGA 43085 37 100.0 36 ..................................... ATCTATACAGAGGTATATTGTGGAACGTTGAGTTTG 43012 37 100.0 35 ..................................... CTGTCCTCAGTCCGTGCCTTCAGGAGGATCCCGGT 42940 37 100.0 37 ..................................... GTTCTTGGGTCACACCCATAGCATGTCTTCTAAGTTT 42866 37 100.0 35 ..................................... GAAACTATACAGAGCGTAATACAGAGAAGGAAGAT 42794 37 100.0 37 ..................................... ATTGTGCTCAAAACATTGTAAGTTTTATTTTCATTTA 42720 37 100.0 35 ..................................... CCCATCCTATAAATCCACAAAGGACATTGAGAAAA 42648 37 100.0 35 ..................................... TAATAAAGTCGCTGCTTTCCGGGCTTGTGCTGCCT 42576 37 100.0 35 ..................................... TATATCATTGAGATATAGTAAGATTAAGTTAAAGT 42504 37 100.0 37 ..................................... TCTTCGATCCAGACCATAAAATCCGAATCTTCTAGTG 42430 37 100.0 35 ..................................... GTTCTGCTTCATGCCCGACCGCATAAATACGAAGT 42358 37 100.0 37 ..................................... TGGAGTGTTTCACCTAAACTCTTCTTACAGAATTGGG 42284 37 100.0 35 ..................................... ATTTCCATCCTGTATTTTGGGAGGAGAATATCACA 42212 37 100.0 38 ..................................... CGCTCAGGAACTCTCTAAAAAGCATAACATGACAATAG 42137 37 100.0 35 ..................................... CTGTGCCAACAACCTGATCTACCCTGTGCGAAGTC 42065 37 100.0 37 ..................................... ATTTATGACGGGGCAACTCCGCTTTTAAGAAATCCAA 41991 37 100.0 42 ..................................... GAAGCTGAATAATTAGCAATTGCTTTTGCTACGCCTGACTTT 41912 37 100.0 37 ..................................... TCTTCAAGGCACAGAACATAATCATTAAAGTCTTCAA 41838 37 100.0 37 ..................................... CAGAATTTTGAGGACCTATTTCTAACACTAGCACCAC 41764 37 100.0 36 ..................................... TTCAGCGATGAATATGGAAAATACAAATTTGACCTT 41691 37 100.0 40 ..................................... CCTACTTTATCACCAGGCTTTCCAACTCCGGCGAGTTCTT 41614 37 100.0 35 ..................................... CACAGGCACCTACCCTTGTCATAGAGTTTCGCCAA 41542 37 100.0 35 ..................................... CATATTTTTGCACCGAGCCAGTAAAAGAAACATTA 41470 37 100.0 36 ..................................... TATAATGTCAAAGAGTATCCTATTTTGTCCTAGAAT 41397 37 100.0 34 ..................................... ACCCTGCTTTCGGGGCTGTAAAACTTGACGGTAT 41326 37 100.0 34 ..................................... TGTAATAGTCGAGTAAACAAACGCATAGGCAAAA 41255 37 100.0 35 ..................................... TGAAAATATAATAACTGCTTCTCCCTCTGGAAATC 41183 37 100.0 35 ..................................... CTTCACGGAGAAAGATAAAGCCCGGTTAATGGAGA 41111 37 100.0 35 ..................................... TCCGAGGTTTTGATATGGTCATGCCGGCAGAATGG 41039 37 100.0 36 ..................................... CTCAAACGCTCATTAAAAGGGCTTCGCTAGATGAAT 40966 37 100.0 36 ..................................... AAAAAGCCGTACATCGTAATGGTGAACTAATAGAGT 40893 37 100.0 38 ..................................... GTTAAACCCATGCTTTTAATAACCTTTTCAGCTTTCTT 40818 37 100.0 35 ..................................... TGTATGTCAATTCGGGAGTTCCGAAACTTGAAATT 40746 37 100.0 35 ..................................... AAAGCTGTGTAATGGTGTATAGTTATGTACTATAG 40674 37 100.0 37 ..................................... TAGGAGTATGCAGCATTAGCGGGTTAAGTGTTGCGGG 40600 37 100.0 34 ..................................... CGTCAACAACGACTCTTGATACGATTATTTTTGA 40529 37 100.0 37 ..................................... TAACTCCTTATGCTCTAATAATCGCAGACGAAACAGT 40455 37 100.0 34 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATA 40384 37 100.0 35 ..................................... TTTCAACCCCTCCTTACAGACCATCGTCAGTGATT 40312 37 100.0 35 ..................................... TTTTAAAGTCATCTTCTGGAAAAACACCGACAACT 40240 37 100.0 37 ..................................... ATTCCGTACATGCATTGAGTGCGGTTGGATTATTACT 40166 37 100.0 36 ..................................... CAAACTCAGTCGTTTTAGTGTACTGAGCTTCATAGT 40093 37 100.0 34 ..................................... TAATCGTAACCCTTGCGCCCGTTCATGATCCAGA 40022 37 100.0 35 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAA 39950 37 100.0 36 ..................................... ATAAACACTGTTCCGGATCAAATCCTTTTTGATAAA 39877 37 97.3 34 .....C............................... TATCACTGGTCACACTCTTAATATTTGGTGACGT 39806 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 39733 37 81.1 34 GG...A..AGT..C....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA T [39718] 39661 37 81.1 0 .G...A..AGT..C......................G | T [39645] ========== ====== ====== ====== ===================================== ========================================== ================== 73 37 99.4 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : TTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 9210-7364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQW01000056.1 Methanosarcina mazei strain 1.H.M.2.3 scaffold50_1_size26221-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9209 37 100.0 38 ..................................... CTCTCCTATTAGACGGAAACCGCTTTACTGGCGAATAT 9134 37 100.0 36 ..................................... AGTTTTGTATATACCCCTGTTCTGATTTCTGCCCAT 9061 37 100.0 33 ..................................... TTCACTGATTGGAAACATAGAGAAATAAGCTAT 8991 37 100.0 36 ..................................... CTCCATCTCCTGCGGTATCATGGATATAACAGTCAT 8918 37 100.0 37 ..................................... TAATATAGATTGCAGGATCAATAACGCAGCCCGTATC 8844 37 100.0 36 ..................................... GGAGTTTAGGCCAGATCTTGAGAAAGTAAAAGATAC 8771 37 100.0 34 ..................................... ATAAATGAGAGTTTTGGCGGTAAAACCAAAATAT 8700 37 100.0 36 ..................................... AAAACCGCGTAAGCTGTCCCGTTATCAAGCTTAATA 8627 37 100.0 35 ..................................... ATGAAATTGTCATGAATATAGGCATGGTTGCTATC 8555 37 100.0 33 ..................................... ATTATTTCCCTTGTTTACATATACCCCGGGCCC 8485 37 100.0 37 ..................................... TGAAGCCTTCAATCTCGTAATCATCTAGTTTAGTAAT 8411 37 100.0 33 ..................................... ACCTCGTCCTGCATGGCCTTGATAGTCTGCCAT 8341 37 100.0 36 ..................................... AGAAATCAAATCCCGTCGTAACAAAAGACTGGCTCC 8268 37 100.0 35 ..................................... GATGAAGGGGCTCAGGATAGAATAGATCAAGTTGG 8196 37 100.0 36 ..................................... AGTAATGCAACCATTTTCAACAGTCGGAAGCACCAT 8123 37 100.0 37 ..................................... GGAATAATCACTCATTTTATTATATGAGGAAAGTAAG 8049 37 100.0 33 ..................................... CGTTGTTCTGAAGGTATCCCCGCTTAGAGCCAC 7979 37 100.0 36 ..................................... GGAACTGTCGGCACGAATGATGAAAACGACATCTAC 7906 37 100.0 35 ..................................... TCTATCTTTCATGCAAGGCACACAGGAACTCTAAC 7834 37 100.0 35 ..................................... TATGTTCGGGCTTGCTTTTCATGCGAATATACTTT 7762 37 100.0 34 ..................................... CGAAACTCCAGGAATGAGGCCTCAATCCAGGAGC 7691 37 100.0 35 ..................................... TCAAAAGGCCAACTACCCACAAGTAAAAGCAGCAG 7619 37 100.0 38 ..................................... CTGTCGGTTGTTTGCTTCGATTGTCGCATACCCCGATT 7544 37 100.0 33 ..................................... ATTCTGACAGGAGTTACATCTGCCCCCGATACG 7474 37 100.0 37 ..................................... TTTAAAGTAAAACACGAACGCATGAATGCACTAATAG 7400 37 83.8 0 ..T.....T.A.....................A.G.G | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.4 35 ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTCATTTTAAGTATCAGGTTTCCCGAAGAAAAGCGGTCAGGATGCAGGCAATATTACTACGAAAAGCTATCACAAACGAACTTCCTATGTATTATCCTCTGGTGTTTAAAAGATGAGGCTAGTAGTTACATATGATATAAGCGACAATAAGATTCGTAACAGGGTTTATAGAATCCTTGAAAAATACGGTGCATGGAAACAGTACAGCGTATTCGAACTTGATATTACTGCAGTGCAACGTGTAGAAATGGAAGATGAAATCAAAACAGAAATTGAGTCTACTGATAAAGTACGCATCTATAGCCTTTGTGACCGTTGCGTAAAAAATATTGTAGACATCGGCCAAAAGACTCCAGATAAAAAGTCAAACATTGTTTAACAGCTTTTTACATTGATGTTTATATATTCTCTGTACGCAAGAGGTTTGGGAATTAATGATTATTTTTTGAGGTTTTAGAAAGGGTTATTACGAAAAAAAACCCTTATTTTCATGCC # Right flank : CCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //