Array 1 43954-45121 **** Predicted by CRISPRDetect 2.4 *** >NZ_QECI01000002.1 Vibrio cholerae strain OYP3E02 Vc_OYP3E02_Contig_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43954 28 100.0 32 ............................ TTTTTCAAAATACCAAAACAGTCCTGAATCTA 44014 28 100.0 32 ............................ TTTTGGCATGGCGAAGAGTCAGAAGTTTTCGC 44074 28 100.0 32 ............................ TCTCCAGACACGCCATCTTCTTGAATTAATCC 44134 28 100.0 32 ............................ TCACTTAATGAATTTTTTCTTTGCCAGAATTG 44194 28 100.0 32 ............................ ATCCTTTTGCTATCCGTTTGCCATCCATTTGC 44254 28 100.0 32 ............................ TCTTACTGACGAGCAAATAAAGCAGCTTGGTT 44314 28 100.0 32 ............................ AGTCGAGATTTACGCAGGGGTAGCCCGTCTAA 44374 28 100.0 32 ............................ ATTAAATTAAGAGTGCAACATTTTTTAGCATT 44434 28 100.0 32 ............................ AATATAAGCTTCTGGTGCATCATGCAAAAGGC 44494 28 100.0 32 ............................ GGAACTGGAAAAACCCACTTAGCCGTGGGTAT 44554 28 100.0 32 ............................ TCTCTGGCGCATTTGCATGAGCTGTTGCAGTA 44614 28 100.0 32 ............................ TCAAGCAGAAACAAGATCCGACGCATCTCTGG 44674 28 100.0 32 ............................ TTTCTTGGTGTCTAACTCCACTACTGACGGCG 44734 28 100.0 32 ............................ TAACACGCTTCCGGTTTGCACTCGTGCCGGTG 44794 28 100.0 32 ............................ AGATTCACGCGCTACAGACTGAGCGCTCGCCT 44854 28 100.0 32 ............................ AATCACATCGCCAGCCGGAATCATAGGAAGCC 44914 28 100.0 32 ............................ GATAGTACGTTTTGCAAGGTACGCCGCGCTTC 44974 28 100.0 32 ............................ ATCTGGCAGTAATCGCCCATTGCCACGGCCTG 45034 28 100.0 32 ............................ AGTAACCACTAAATACCAAGCCGGATTAAGAA 45094 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACCGCGACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GCTTTGCGGCTGTTCTTGTATTCGAGCTGACAGTTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2709-2501 **** Predicted by CRISPRDetect 2.4 *** >NZ_QECI01000401.1 Vibrio cholerae strain OYP3E02 Vc_OYP3E02_Contig_468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2708 28 100.0 32 ............................ TGTAAAGCAAGCATGTTTAACGTGCCATTCTC 2648 28 100.0 32 ............................ TTCATCGGTAATCAAGGACACTTTGGGATCAA 2588 28 96.4 32 ...........T................ ATGCCTTTGGATCGTCGTGAAACTTGCGGTGT 2528 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GACCGCC # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //