Array 1 660-192 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LOLZ01000172.1 Legionella pneumophila strain NY23 contig_172, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=====================================	=====================================	==================
       659	    37	 100.0	    33	.....................................	GTATCAACAGGAGATTCACGACGAATCCGTAAA    	
       589	    37	 100.0	    33	.....................................	GAATATTTAATATCCAGCCGGTATAGTACAATG    	
       519	    37	 100.0	    37	.....................................	GTTCTTGTTTGCCATAATTTTCACTGCCCCTCCCTGA	
       445	    37	 100.0	    35	.....................................	TCATTATAAGGCAATGCGTCCGTAGATATGCGATA  	
       373	    37	 100.0	    36	.....................................	TTTTACCTGTTTTATATACATAATCGCTTTCTACTT 	
       300	    37	 100.0	    35	.....................................	GTCGCATCGTTTTCATGGTCGTAGCCTGACTTCTT  	
       228	    37	  81.1	     0	....A......C...........TT...T.A.....T	|                                    	
==========	======	======	======	=====================================	=====================================	==================
         7	    37	  97.3	    35	CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC	                                     	       

# Left flank :   TGAAACAACAAGATCCGCAACCTCCTCTAGTCTAATTATA
# Right flank :  TACTCCATACTTTATTCTCTGTATACTATTATAGTAAAACTCCATGGAGTTATTATTTTATATAATTAAACATGTCGTAACTCCATGAATGTGACACTTTCATGGAGTTACGACAGCTGTTATGTTTGCTTGTTTTTCATCTTATTTGCTTAATAATTAACTTGAAAATTATTAAGTGCTTTTATTTTACTC

# Questionable array : NO	 Score: 6.12
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.16%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-0.30,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-41.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,0.41   Confidence: LOW] 

# Array family : NA
//


Array 1 8758-9157 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LOLZ01000018.1 Legionella pneumophila strain NY23 contig_18, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	=====================================	=======================================	==================
      8758	    37	 100.0	    36	.....................................	CTGCGGAGCTTTGCAATTGAACGTCTTGTTCAAACA   	
      8831	    37	 100.0	    36	.....................................	TCTGCAGCTGGTTATGCCGTAACCGCAACGACTGCT   	
      8904	    37	 100.0	    32	.....................................	TACAATCATTGAATGTTTGACCAGTCAAAATG       	
      8973	    37	 100.0	    35	.....................................	CCCAAATGGTGGTTGTATTATGTGGACGTGCCACG    	
      9045	    37	 100.0	    39	.....................................	TGGTTATATCCCTTAACGTAAAAACGCCTGTAAACGATG	
      9121	    37	 100.0	     0	.....................................	|                                      	
==========	======	======	======	=====================================	=======================================	==================
         6	    37	 100.0	    36	CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC	                                       	       

# Left flank :   TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCATATGGAATGCTTTCTGAATTGATTTTTGAAAAATCATGTACCCGAGGCTATATTATTACTGGTGAAAAAGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGCTTGAAATTTATGCTAAAATAAAGAAGATTTTTGACACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTAAAATCGTTATATGCTCGCTATTAATACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTCAAGTATTGCCTTTTTTTTCGAAAAATCAAGTCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT
# Right flank :  AACAAGATCCGCAACCTCCTCTAGTCTAATT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.16%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,-0.30] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [73.3-30.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.27,0   Confidence: MEDIUM] 

# Array family : NA
//