Array 1 28052-27302 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBEI01000026.1 Legionella pneumophila strain NMB001868 503151-08_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28051 28 100.0 32 ............................ AGTACCACGGCACAAACACCGCCTGAAAGTTG 27991 28 100.0 32 ............................ TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC 27931 28 100.0 32 ............................ TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC 27871 28 100.0 33 ............................ CAACAGACACGACAGGGTAGGGTTGCCCACAAA 27810 28 100.0 32 ............................ GCCATCATGATTACTAAAGTCGATTGTGACCC 27750 28 100.0 32 ............................ CAAAGTGTACGGAGATAGACCGCAAGACGACA 27690 28 100.0 32 ............................ AATATAAAGCATCGGGAAAATGTAGACAAAAT 27630 28 100.0 32 ............................ AAATGCACGGCGCAAAAGTCAGAAAACAGCCT 27570 28 100.0 32 ............................ AGACAGAAATCCGGCTGGGCTAGAAATGATGA 27510 28 100.0 32 ............................ TCTTGCCTGCTCTTAACTACAACTCCAGACCA 27450 28 100.0 32 ............................ AAACAACCACACCTCCCTTTTTAGTTAATCTA 27390 28 100.0 33 ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 27329 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCAGCTTAGAAATTACAAAGCCTGCTGTATGCGTCTTTTAATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTGATGTTCGTGCGCCCTATTCGCAGTTATTAGTTCACTGCCGCACAGGCAGCTTAGAAATTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAA # Right flank : TTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTCTCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATCCCCTCCAACGTTTGAGATGGGGGAAGGCATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32468-28418 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBEI01000026.1 Legionella pneumophila strain NMB001868 503151-08_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32467 28 100.0 32 ............................ AGCACCACCAAGGGTGGCAGCAAGCATAGGAT 32407 28 100.0 32 ............................ AATAAAAATCCCAGCGAGTTTGACGAGAAAAC 32347 28 100.0 32 ............................ AACAACTTTGGCCTTTATCATAATCTTTCAAC 32287 28 100.0 32 ............................ TAAAAAGCATGTTTTGTTGAAATAAGGAGATA 32227 28 100.0 32 ............................ TCCGGTTGATCGTATTAAGGCTCTTGGTGATG 32167 28 100.0 32 ............................ TTAATAAAGAGATATATGCCCAAGGTACTTCT 32107 28 100.0 32 ............................ AAACTAACCGATACGGAACAGCAAAGAAAAAA 32047 28 100.0 32 ............................ GAATGCCTCCGAGCACGCCCAAGGATTATTTC 31987 28 100.0 32 ............................ ACACGCTCTATCAATGAAATAACCCTGGAGGA 31927 28 100.0 32 ............................ AAGAGGGAATCACTCAACTTGGATTGAGGTAG 31867 28 100.0 32 ............................ TTTTTTTAGTTTAAAAATTAGTTGATTATAAA 31807 28 100.0 32 ............................ GCAAAAATCTCATTTCCAGCAAATATATCCCA 31747 28 100.0 32 ............................ ATAATCACCTTGATATCTGTTGACATGCTCAA 31687 28 100.0 32 ............................ TGACTATGGAAATCTTAAGATTTCTGATTTTC 31627 28 100.0 32 ............................ TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA 31567 28 100.0 32 ............................ CGATGAATCAACTATCAATAGATGGCGTTTAC 31507 28 100.0 32 ............................ AATAAACAAAATTTGGAGTTAAATGTGAATGA 31447 28 100.0 32 ............................ TTCAGCACATCATATGCGCAGTTAATCAACTT 31387 28 100.0 32 ............................ ATACCGACACATTTTAATGGGATGGGGTGTCT 31327 28 100.0 32 ............................ ACTTAATATTACCGAGCTAACATCAGCTAAAA 31267 28 100.0 32 ............................ TATCGCAAGGCGTGTTCTTTGTATCATCCAGA 31207 28 100.0 32 ............................ TGAAAAAACATTACACAATGATTCTACTATAC 31147 28 100.0 32 ............................ ATTACACATATGACACTTAATCATTATCAATC 31087 28 100.0 32 ............................ ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT 31027 28 100.0 32 ............................ TGTATCCACTGGAGACTCTCTTCTAATTCTTA 30967 28 100.0 32 ............................ TGCTGAATCAAATTGACGCCTATAAGTTAAAT 30907 28 100.0 32 ............................ TCTTTAACTTCTCTAATTATAGTACTGTTATC 30847 28 100.0 32 ............................ AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT 30787 28 100.0 32 ............................ ATCTGCTTCATAAATTAAAAATGGAGAACTAG 30727 28 100.0 33 ............................ CACCATTAACAGTTCCTGCGAGTACCGGCACCA 30666 28 100.0 32 ............................ ATAACAGCGCAAGAGATTAAGGGATAGATAAA 30606 28 100.0 32 ............................ TTCTCAACACAGTCTTTTTTGCCATCTCTTCA 30546 28 100.0 32 ............................ TATACCGACTGCGCTTCCGGTGGTTCTTTGTG 30486 28 100.0 32 ............................ AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA 30426 28 100.0 32 ............................ ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC 30366 28 100.0 32 ............................ ATAGTGAAAGTAACATAACCACGAGCAAAAAG 30306 28 100.0 32 ............................ TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA 30246 28 100.0 32 ............................ TCTGATAGCGCAACGGCACTGGCCACCCAGCA 30186 28 100.0 32 ............................ AGACAAGACTGGAACAATATCTCCAGCCTGTA 30126 28 100.0 32 ............................ ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA 30066 28 100.0 32 ............................ AGGCAGTCGGAGAGCAGGAAAACACGGAAATC 30006 28 100.0 32 ............................ GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC 29946 28 100.0 32 ............................ ATTTGAAAAATCTATCCCTAAATCTTATGTAC 29886 28 100.0 32 ............................ TCTTTGAAATGACAAAAAGGTATTATGAGTAC 29826 28 100.0 32 ............................ ACAAGAAAGCGTGGACTTAATAGAGTTACTAG 29766 28 100.0 32 ............................ TTCCCACGATGCCAGCGAGCAAGAAACAGAGG 29706 28 100.0 32 ............................ GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG 29646 28 100.0 32 ............................ ATTTCGCCTTCAACGTCATGCGATAAATTTTT 29586 28 100.0 32 ............................ GCTTGAACTTCTGCGACTGCTCTATCGGATTG 29526 28 100.0 32 ............................ TTTGGCTTCCAATGGCGTTGTATTAACAAAAA 29466 28 100.0 32 ............................ AGTCGCAACATTCCCGATTGACAAGTAAAGAC 29406 28 100.0 32 ............................ ATATTCTGTTTGACCAAAGCAATCATTTGAAT 29346 28 100.0 32 ............................ TACAAGTCAAAATTTTCTATTTCTTTGACAGC 29286 28 100.0 32 ............................ ATAGATGTTACGTTAGACCAAAGTCATTTGGG 29226 28 100.0 32 ............................ TTGCAGCGAAGGAGAAGTGCCATAATGTACAA 29166 28 100.0 32 ............................ TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA 29106 28 100.0 32 ............................ TTCGCGTCTTTAATCTGTATATTCGGGTGTTA 29046 28 100.0 33 ............................ AATAAGGTCGAACTGCTACACTAAGTTTACACC 28985 28 100.0 32 ............................ ACTACATTCTTTAATACTTGTGCCATTTCTTA 28925 28 100.0 32 ............................ AAATAACCGGATTGAACCTTCCCGAATAACAC 28865 28 100.0 32 ............................ TAATGCAATTATCATGAATAATACTATGCACT 28805 28 100.0 32 ............................ TCCTGATTATGTTTTATCCAAATGTAAATTAT 28745 28 100.0 32 ............................ ATTACGACAACATAGAAGGCATAACCACAAGG 28685 28 100.0 32 ............................ TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT 28625 28 100.0 32 ............................ GCTGCTTATATTGGCGGCGACCTTTAAGATTT 28565 28 100.0 32 ............................ TTACAAAGCCTGCTGTATGCGTCTTTTAATAA 28505 28 100.0 32 ............................ TTGATGTTCGTGCGCCCTATTCGCAGTTATTA 28445 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 68 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTAACTATTTTTTTAAGATTTATATTAC # Right flank : TTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTACCACGGCACAAACACCGCCTGAAAGTTGGTTCACTGCCGCACAGGCAGCTTAGAAATACTACGTCCTTAGCTCTTAAGTCTTTTGTGCGTTCACTGCCGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30-3237 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBEI01000032.1 Legionella pneumophila strain NMB001868 503151-08_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30 28 100.0 32 ............................ GCTAACCCAGACCCATGTACCGCACACTTCGA 90 28 100.0 32 ............................ ACTTGTCGTATCTGATGGGAGTGACACCTTTT 150 28 100.0 32 ............................ CCAAGGCGAACAGGGACAGCCAGAAAGAACTT 210 28 100.0 32 ............................ CTGCTAAAAAACACAATGCGATTGACAAAGAA 270 28 100.0 32 ............................ TGGTGAAAGCCTAAACTCCTTAACTCCCCGAT 330 28 100.0 32 ............................ ACTATATCGCCTGGTATAATGCGGATAATACA 390 28 100.0 32 ............................ ATTGGGTGCAACAGCACCTATAGAGTCCAATA 450 28 100.0 32 ............................ TTTTAAAAACCAATTTTTGCCGTGGCTCGATG 510 28 100.0 32 ............................ TAATGCAGAATTAGGAGAAAAAACAATCTTAC 570 28 100.0 32 ............................ AGTTTGCGTAAAAGATTTTCTAATGATCCTTC 630 28 100.0 32 ............................ TGTAGTACCTGATCCCATACAAAAATCTAACA 690 28 100.0 32 ............................ AAAATAATCCGACAAACTACCATTCGCATAAC 750 28 100.0 32 ............................ TTGGCCTCAGAAAGGCCCTGCTGTTGAGTTAC 810 28 100.0 32 ............................ TTTTTGCATGTAAGGCTTATCCCACTTGCCTA 870 28 100.0 32 ............................ TATGTACATGGCCGCAAGTGATTCAGCCTTTA 930 28 100.0 32 ............................ ATCACGAATGCACCCAAATTGCCTGTTAGTTA 990 28 100.0 32 ............................ ATGTAGCGAAGGCGAGGTTCCATAATGTATAA 1050 28 100.0 32 ............................ CACTCGATGGGGTTTTCGGAGAATCATTCAGC 1110 28 100.0 32 ............................ ATTACCATTTTTTTAATCTGCTCAGATAATGG 1170 28 100.0 32 ............................ TTCCAGCTCTAATATTTTACACGCATCATATT 1230 28 100.0 32 ............................ CTGCGGGCTTGGAAATGATGAAGGCTGTTAAT 1290 28 100.0 32 ............................ TGTCTGCCGTGTCGCCGCCGCCAGAACCTAAC 1350 28 100.0 32 ............................ AATTGAACAGATAGTTGAAGAATCAGTAAAAG 1410 28 100.0 32 ............................ TTCTTAGTCCCTTTACACGCTGGGCATCTAAT 1470 28 100.0 32 ............................ TTGAGAGTTGCTCTTATGGCCTCTTTTGTAGA 1530 28 100.0 32 ............................ TAATTCATGAACGATAGGGTAGGTACTAGCAT 1590 28 100.0 32 ............................ TCATTTTGAACTGTAAATAAACCTTTCGTTAA 1650 28 100.0 32 ............................ ACTGTGGTGAGTATGGTGAGAAGTACGGAAGA 1710 28 100.0 32 ............................ ATGTGCACCTACACCGTGAATGTGCCGGTATT 1770 28 100.0 32 ............................ TCTGAGCTTGAGCAGCTTGAAAAACAAATACA 1830 28 100.0 32 ............................ AAAACGTGCTCCACCATTTAGTTGACGGGTCA 1890 28 100.0 32 ............................ GCTTGTGCCATGCGCTTAACTATTGCCCTTTC 1950 28 100.0 32 ............................ GATATGTGAAGAAGCAAAGCAAGTAATTGCTA 2010 28 100.0 32 ............................ TACTAGCCCTTAGCTATGACGAGCTCGACCAG 2070 28 100.0 32 ............................ GATTGAGATTTCAGTCGAATATATTTTACCTG 2130 28 100.0 32 ............................ TGCCCTGAACTTAGATTAATAATTACTCCATG 2190 28 100.0 32 ............................ GCTTGCACTTAGTAGGTAACGCTATCGTCAAT 2250 28 100.0 32 ............................ TATAAAATTTAATTCAGCGTCATATACCGGCG 2310 28 100.0 32 ............................ TCAGCAGCAAGACCCGGGGTCTGCAACTCAAG 2370 28 100.0 32 ............................ AAAGCCGCCGACATACGCCCTAAACTTGGTGT 2430 28 100.0 32 ............................ TATCTATTTAGATATAGCCTTCTTTCTGTAGA 2490 28 100.0 32 ............................ AGCAGTTCCAGCAGCATTTGATGGCTTATAAG 2550 28 100.0 32 ............................ ACAAGAGGCGCAACTAAACCTAACACAAATGT 2610 28 100.0 32 ............................ GGAATTTGTCGGCCGCATAGACCGCTTTTATC 2670 28 96.4 32 ...............A............ TTAACAGTTAATCTTTCAACATCAGATAAACT 2730 28 100.0 32 ............................ TTACCTCATGACTTGCTTTCTAACCTTTGCGC 2790 28 100.0 32 ............................ TGTCCGCCGTGTCACCGCCTCCGGAACCTAAC 2850 28 100.0 32 ............................ CAATTCGAACAAAACATAATCCTCAGGATTCT 2910 28 100.0 32 ............................ TGCTGGATTGTGCCCCAAAGCAAACAGAGACA 2970 28 100.0 32 ............................ AATACGTGGTTATGACCTCATCTAAAGACGTA 3030 28 100.0 32 ............................ ACATGAAGATAAAAAAACGGGCAAAAAGACCT 3090 28 100.0 32 ............................ AAATGCCGACAACGGCGCTTAAAAGGTCTTCT 3150 28 100.0 32 ............................ GCGATATTTTTAATCAAGAATTCGAAACATAT 3210 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 54 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAACTATTTTTTTAAGATTTAGAGCAGAG # Right flank : GTTATTATGTTAAAGGTGTTAGCACGCTACGCAGCAAGGTCGGACCAAGGCCTGACCTTGTTTTGATTAGGAAAGTCTAATCATGACTATAATCTCCATTTCTCTTTATGGAGTACAGCAACCGTTAGTCAAATCTATAAATAACCTAAACAAATAAAAATAAACTCTCTAGTTCCATGGAAATGAGTGTAATTGGATCGAAGTCAAAATAAATTGTGAAGTCTGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGAATCATGAGAATAATCTAATGGTGTACGTTAATTATACACGTATGCTAAAAATTACTACCTGATGAGCTAGGATATTCTCTACCGCGTTGTTTGAATCACACTGAGTCAATCGTAAATTTATTTAGCATTACTGAGAATTATTTAATCCTCAAAAACTCAATAATAAATTTAGATATTTCACAAAATCATACGGTGAATGCTCTCCTGGTTTCGTCAGTTACTGAAATAGTGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //