Array 1 159-492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUP010000002.1 Campylobacter concisus isolate 2010-378007-O, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 159 35 100.0 41 ................................... CCCCAGTAAGCACTTTAAAACTATCTTTTGTAGGCATTTTA 235 35 94.3 37 ......................TT........... ACTCGCTTACCGCTTTTTCAGTTACTGCTACATCTGT 307 35 94.3 41 ......G.........................A.. ACAGTTACATAATCGCTTGTTGCATACTGATCAACAATAAC 383 35 100.0 40 ................................... ACACTTCAGCCATTTTTCCGAAAAACGTAGTATCGATGAA 458 35 91.4 0 .............................GC.A.. | ========== ====== ====== ====== =================================== ========================================= ================== 5 35 96.0 40 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAA # Left flank : TCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCTA # Right flank : ATTCCATAATCCATATATAAATTTGGGCCATTTCGCTTACATAAAAATTGTAGATCTTTTTGCTTTCATTTTTTGCGACATATCTTGCCTATGTTTCATTTTAAGTTGCTGCATATTTACAAAAGGAAGAGTAATGAAAATAACAGCAAGAGATGTGATAATAGTGGCATCTATCAAAAGAAACATCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAGATCTATATAAGAAAGCAAAAGCGTTCAAATTATCCTAAGCTCAAATAGTCTATTACCAAGAAACACTATGATGCCTACTCAAATGTGATCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCTAGCAAAGATAGAGTATAGTCGTCAGCACTTTTTATCGTAAAAGTATTTTTCGCAATTATTTTTTACACCAGTGATATTATCATTTATAATAACTTTTGAGTAGAAATATTTTAATGTGAGCTTGGTATTTTTAACAAGGTAGTTTTTT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 145968-146235 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUP010000005.1 Campylobacter concisus isolate 2010-378007-O, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 145968 36 80.6 43 T.A.TGT.............T.C............. CATCATTTTCTGCCCTTTGACTACTATGTTATAGTAGCCTCTA 146047 36 100.0 39 .................................... CTTTAATAAGCCCCTCTTTATTTCTTACTATCATAATGC 146122 36 91.7 39 .......C..............CA............ CAGTTTTGTGATCCAGCTTTCTGCACCACTGTCGTTCAC 146197 36 94.4 0 ......................CA............ | C,AA [146227,146229] ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 91.7 41 ATTTAAATAAATTTGACCCGATTTAGGGGATTGAAA # Left flank : TACGCTTTTTAGTGCATACCCAAAGGCTCCTCGCACCTGCGAGCCGATAAAAAATGGCAGCTTTTGTGACGGTTCAAATTTCACTCTAAGCTCGGCGTACCTCATCAAAACTCCTTATCTTCACATAGTCTAAAACCATACCCACCATGCTCTTTTTTAGGCCATTTTTTCTATTTGTTTTAAGTTTGGGGATAAATTTATTAAGATCTGGTAGTTTTATCAGCACTCTAAGACTATCTCTTCTCACCCTTATATAGCGAGAAAAGGTCAAAATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGAATTAAAGGCAAATGTTTATAATTTTTAAATTTTTGTTTAAAAATTATTATTTTTGTATATTTTGCGCACCTTTATCACTCTTGGCTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGCTATTTAAGATAGGTTCTTTTACTTA # Right flank : ATTTGGTAAAGTATATGTGGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGGCTTATGAAGGACTACAATAATGATAGATTTTTGCGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCCCGCAAGATAAACCAAAAGAGAAATTTCTACGCCACCAAGATCGCCTCGGATTCTACGCTTCATATCAACCAAATAGGTGTCTATCTAGGCCTTAGCAAAAATAAATTTACCATAAAGCAATACGGCAAAATTTATAAAGAATTTCCCATCTCTAAAATTTCCCGCATCATCGTTGATAGCGAGCATATCTCACTATCTTCTGCAGTGATATGGCGCTGCGCAAGAGAAAAGATCCACATCGATTTCATAGACAAGCACTACGTCCCATACGCTACCTTACTAGCCTACAATAGCACCTCTACACAGACAGCACACAAACAA # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATAAATTTGACCCGATTTAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 148149-148484 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUP010000005.1 Campylobacter concisus isolate 2010-378007-O, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 148149 37 94.6 39 ....................C..T............. GCAATGATCCACTCCATAGTGTCTCCTTTTAATAAAGTT 148225 37 100.0 37 ..................................... TTTATACCAAAGACAAACATTTCATTTGCTTTTATGT 148299 37 91.9 37 .....................CTT............. TAACTTATAATATCTCCGGTAAAAGCTATACTAAAAG 148373 37 100.0 35 ..................................... ACTCGTTTGCCTTGTGCTGCTAAGCCTTTCTTAGC 148445 37 97.3 0 ....................................A | C,AA [148475,148477] ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 96.8 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : AGCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGACGCAAGAACTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTTGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGC # Right flank : ATGGTAAAGCGTAGGCGCTTTATGTTGTTATTTATAAAAATGAGTAGCGTTTATATGCTTTTGTTGAGTAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTTGTGATTTGCGTATATAAATAAAAAGCTACTTCAAATTAGCCATGAACCAAAATTCATGGCTTACATAGGCCAACTATTTGGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTCGTTTGGACCTTGGTGTAGCCACCAAAGCTTTGACCCACCTTTTGGTGAGCACGAGTAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTGTTTTGTTTTGTTGAGTGAATTATAAAGTGGTGTGTGGACATATTGTGTATAATTCTTAATAACTTTAGAATATAAAGGATAAAGCAATGGATGCTCAGACTAGGATACTATGGCTACTTAAAAAGCTAAACCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //