Array 1 429154-429851 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRE01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 88 NODE_3_length_656711_cov_18.5948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429154 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 429215 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 429276 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 429337 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 429398 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 429459 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 429520 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 429581 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 429642 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 429703 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 429764 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 429824 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446521-447953 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRE01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 88 NODE_3_length_656711_cov_18.5948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 446521 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 446582 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 446643 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 446704 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 446765 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 446826 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 446887 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 446948 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 447009 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 447070 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 447131 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 447192 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 447253 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 447314 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 447375 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 447436 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 447497 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 447558 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 447619 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 447680 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 447741 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 447802 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 447863 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 447924 29 100.0 0 ............................. | A [447951] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //