Array 1 119876-120837 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QLSH01000032.1 Streptococcus iniae strain QMA0084 NODE_1_length_244206_cov_126.319_ID_1417, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    119876	    36	 100.0	    30	....................................	TGTCAATGGTGTTAATTTCACAGGTCTTTA 	
    119942	    36	 100.0	    30	....................................	ACTTGACATGAACAAAACACTTACAACAGT 	
    120008	    36	 100.0	    30	....................................	TGGCGCAGAATAGATTGCACCGCCAACTTT 	
    120074	    36	 100.0	    30	....................................	GCTACGTTTTTTTGAGCATTATTAAACCCT 	
    120140	    36	 100.0	    30	....................................	TTTATACGTGACGGAGTGTGCAACTCCATC 	
    120206	    36	 100.0	    30	....................................	CACCCCAGTTGTTATCAACACGAGCTACGT 	
    120272	    36	 100.0	    30	....................................	AATATATGACGGAGATAACTTTATCGACTT 	
    120338	    36	 100.0	    31	....................................	CATGGATGCCAGAATTTTAAATTGGTATAGT	
    120405	    36	 100.0	    31	....................................	TAGGGACTAGCGGTTATATGCAAATAATGTT	
    120472	    36	 100.0	    30	....................................	ACAATTATTTTATGTCAGATATTGATGAAT 	
    120538	    36	 100.0	    30	....................................	TTAATTCCTTGGTTGTCAGTGTAATAGATA 	
    120604	    36	 100.0	    30	....................................	CGGTTTAGCTGCTCTTGAGAAGATTGTATT 	
    120670	    36	 100.0	    30	....................................	TTAGTATTAAATATAATATCAACACCTTTA 	
    120736	    36	 100.0	    30	....................................	TACAACAGTACCTATAAGTGTGGCTACACC 	
    120802	    36	  75.0	     0	................T.....TG..T.T.TTT..G	|                              	
==========	======	======	======	====================================	===============================	==================
        15	    36	  98.3	    30	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	                               	       

# Left flank :   AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG
# Right flank :  GGCAATATTTCCCATTTGAATAACTTACACATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//