Array 1 4033320-4032570 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009125.1 Pectobacterium atrosepticum strain 21A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4033319 28 100.0 33 ............................ TGAAATGATCGCTGCACGTCCGCAAGGTCATAA 4033258 28 100.0 32 ............................ TGTTGAAGCTCGATCGATACTGGAAGGTACTT 4033198 28 100.0 32 ............................ GAGGTAAACCCTGATGAGTTGCTGGCTGATTT 4033138 28 100.0 33 ............................ TGATAAGCCAAAGACCACGCATACATGGCCTTA 4033077 28 100.0 33 ............................ GCAGGGTGTTCTGCGTTATCTGCGCGTCAACTA 4033016 28 100.0 32 ............................ TGCATCTTGCGTTGAGTCGAGTTTATTCAGTT 4032956 28 100.0 32 ............................ TTATTGAGTACGCCGCAAAACTAATTAAATAA 4032896 28 100.0 32 ............................ AAACTTCTAATGTCGTTCATAGTGGATAGCGT 4032836 28 100.0 32 ............................ AGAGAAACCGTAAGGAGTCGCCATGTTCCATT 4032776 26 92.9 32 ..........--................ TTGCTGATTGGAGTAAGCACAACGTGCATCAT 4032718 28 96.4 32 ...........C................ AAGCGTAGTACAGAGCAACCCCGAGGCGGACG 4032658 28 96.4 33 ...........C................ ACAGACAGAAGGTGCATAAAAAGGAAGCCTCAC 4032597 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATAGATAATAACCATGACGCCAGCGAAATAAATCGCAAGCTAACTATTTGATAAGGAAAAATATAATATTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGTATGTGAAAAATGATGACCGCAAAAAATATTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CGGTACTCAGCGCTGCTGTCTGGTTATTATCGAGGCTGCACTGCGCCATCGCTCAATGCCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTTTCTTTTGGTGCGAATGGAAAATTGCAGATTGGACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAGTGAGTCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCTCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4043420-4043988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009125.1 Pectobacterium atrosepticum strain 21A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4043420 28 100.0 32 ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 4043480 28 100.0 33 ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 4043541 28 100.0 32 ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 4043601 28 92.9 32 .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 4043661 28 92.9 32 A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 4043721 28 96.4 32 .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 4043781 28 100.0 32 ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 4043841 28 96.4 32 .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 4043901 28 96.4 32 .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC 4043961 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCTGCGTCAGCACGCTCTTCTTGCAGAAAAGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCAAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTACCACAGGGTTGGCACCCTTTTTTCATGGACGCTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : TTTATCGAGATAAGTCTCTAGCACGGCTCACCTCAAGGGAGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTAAGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //