Array 1 638183-638343 **** Predicted by CRISPRDetect 2.4 *** >NC_020291.1 Clostridium saccharoperbutylacetonicum N1-4(HMT), complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 638183 30 100.0 36 .............................. GAGGAATGATGACAGGCAATGAAGTAAGAGACTGGA 638249 30 100.0 35 .............................. TAGAGTACAGGATGTGTTGTTTGCATTTTTTGAAA 638314 30 93.3 0 .........C.....T.............. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 GATTAACTTTAACATGAGATGTATTTAAAT # Left flank : TATATCCGAGGGTGAAAGGTGATACTCCTATAGTTAGCTCGGTATATCAATTGTCAAATGAGGAATTGTTTGATGAATCTACAAGACCGAATGAGGAGCAGAGAGAAGAAATGAAAGAAAAGATTAAAAATGAAATTGTACGTCTACTTTCAAGATAAGTATTAATCTACTTATATACATCATACTTAAAATAGTAATAGTGAAAACTATTATAAATGGAATCATACCTATCCCTCCAAGAATCATAATTGTATTAATTATAACACTTATTCAATTTTCAAAGAACATTTTTTAGTGGTTTTATAATTCAATATTTCTAAATTTCATCCCAGCCATAAAACAAGAAAAATTTCATGAAAGTCGGTGAAAATAAGGCATAAAGAAGAACTTTTTGAGTGGTAGCTAAAATTCATAAAACAGCTGGTAAATTTCTATGAAAAAGTTGATTCTAAGCGGAATGGATGGTATTATTGATTTTAAGGAATGGCTATTTTGCTATG # Right flank : TCCCAATAGTTAGTACGTCCTATTATTTTGTAATAAAAAATATCACGATATTCATATATTATTCTGAATATTGTGATATTAAAAATTGTTGTTTACAATTTAGTAACTTATTTAATTTATAGTTAATATTCATTCAAATAAGTCTGTAATAGATCTGCTAACTTTCCGATATGTATTCCATCGACAAATGAATGATGTGCTTGTATGGAAAATGGAAGCATCATTTTTCCATCTTTCTCGGAATATTTTCCCCAATCAAATAATGGTGTGGCATTATCCTTTTTACCAGAATTAGTATGTGAAATATGTGTATAAGATATCCATGGTAAAGGTGAAAATTGAAATATATCATTACCTAATGGACCTGTAAAGTACTCCTTTTGGTTTGAAGCTGCCTTAGTGGCCTCAATTACATATTCCTCCAATGTATCTTTCTTCAACATTAACAACTTTAAATAACTCTGTTTCCTTATTCAAATAGGTAAATGCAGTATCTATTC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACTTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 4649618-4649404 **** Predicted by CRISPRDetect 2.4 *** >NC_020291.1 Clostridium saccharoperbutylacetonicum N1-4(HMT), complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================= ================== 4649617 31 90.3 29 ......T.....G...T.............. TAGTGGAACCTGGTACTTTACAGATACAA 4649557 31 100.0 29 ............................... CAGAGGAGCTTGGTATTTTGCCGATGGGT 4649497 31 100.0 29 ............................... TAAAGGGACTTGGTATTTTACAAATACAT 4649437 31 80.6 0 ....G......C....T....A.T.G..... | TG,A [4649407,4649417] ========== ====== ====== ====== =============================== ============================= ================== 4 31 92.7 29 CAGGAGCAATGAAAACAGGTTGGATAAATGA # Left flank : ATGGTTAGTAGACGGAAAAGAAGTTTATAGAGCAACTAAAAATATTCCATCACATCCTGGTAAAATCATGATGAATTTATGGCCAGGAACAGGTGTAGATTCATGGTTAGGTGCTTATAATGGAGTAACTCCAATTAATGCATATTATGATTGGGCAGCGTATGATCCTCAGTAGAAATATATGGTTAGCTATAGAAAGCTGGTTTTGAAGTATGACAAATTATGAATTTTTAAATTAAAATTTATAAGCGAGTAATCATAAGCAATTAATGAAAACACAAAAAAGTACGAAGGAGAATTATCATAGATGAAGAAAGTTAAATTGAGAAAAGTTATAGCTGCAGTAGTTGCAACAAGCATAATCCCAGCAATCTTATCAAGTGGTGCAAGTGCTGAATGGAAGCAGTTGTCGGAAAATGGTACTTGGAGTTATATAGATAATAATGAATTAGCAACAAATTGGAAGTTAATAGATGGAATTTGGTATAATTTTGATTCAT # Right flank : TGGAAAAGTATATTCTCTTGCATCATCAGGAGCAATGCAAACTGGTAAAGTTATGATAGATAATAAAGAATATAACTTTAGTAATAATGGAGATGCTATTGGAGAAATACCAAAGGTGTCTAAAGCATTTGATGGCAAAGGAGCTACTGTTACTAAACAAGCTGATAAACCAGCAAATACTGAGACTTTACTAAGTAGTACAGCAACTAAAAAATCATCGTCAAATAGATCGTCATCGGGAAATGCATCCTCTGGTAATTCAGGATCAAATGTTGGAAATGCTAATCAAGAACAGGATAAGTGGAAAATGGTGTGGAGCGATGAATTTAATGGGGATAACTTAGATACTAATAAATGGAGTTATCAATATGGAAATGGTACTGAATATAATGCAGTAGATTGGGGAAATAATGAAAAAGAATTCTATACTGATAAGAATACGAAAGTTGAAGATGGAAACCTTATTATAGAAGCAAGAAAAGAAGAAACGCCAATTAAAT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGGAGCAATGAAAACAGGTTGGATAAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 5280856-5276899 **** Predicted by CRISPRDetect 2.4 *** >NC_020291.1 Clostridium saccharoperbutylacetonicum N1-4(HMT), complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================== ================== 5280855 29 100.0 37 ............................. AATGAATGGAGACAAGTTCTTAATTTACCGCCTAAAG 5280789 29 100.0 37 ............................. TTTACCTAATGCCATTGCAATCAACCTCACTTTCTTC 5280723 29 100.0 36 ............................. TTGGTATTTTCATGTAAAACTTTCCTGCATCACTTG 5280658 29 100.0 36 ............................. CATGGATATTATTCATATCAATTTTATGTTCATCAA 5280593 29 100.0 37 ............................. TTTTTCTTCATGTTTTTAAACCAGTTAACTATTTCAG 5280527 29 100.0 36 ............................. ATAGGCTACTCTCTGATTGTTCTTTTTTGGCGTTAC 5280462 29 100.0 36 ............................. TATTAAAAATAAATAATGTATCTGTTGTATTTTTAA 5280397 29 100.0 36 ............................. CTGCTTTATATGGAACTTATTACAATGCTTATAGAG 5280332 29 100.0 36 ............................. TTTAATTATTTTAATCTTCCATTTGAATCTATTAAA 5280267 29 100.0 37 ............................. AAATAAGATTTCATAAGAGTTAACTTATTACCTCTAA 5280201 29 100.0 36 ............................. ACAACTAAGATACCATCCCCATCAATTATATATTCA 5280136 29 100.0 36 ............................. CCAAATTTCACGTTCCAGCCTCTTTTTTTCTTTAAA 5280071 29 100.0 36 ............................. CTTGCTGCTTTTCTTCTTTTCTTCAATTTCATAAAG 5280006 29 100.0 37 ............................. TTTGAATTTGTTTTTGTTCATCAAGTTTCTTGTCTTC 5279940 29 100.0 36 ............................. TTTTCAAATGCCATAGACATTAATTGTTTTGTTAAG 5279875 29 100.0 37 ............................. TCAAATTAATTGTTTCATTAACATGGTCACTAATCAA 5279809 29 100.0 37 ............................. CTAATCATAATTTCTGAATTTTGAAGCTTTCCACATT 5279743 29 100.0 36 ............................. TATTTTTATTGCTTTTTTCTTGCAATAAATGTATAA 5279678 29 100.0 37 ............................. TGGTTTACATTTGTTATTGTAGATATTAACACATCAT 5279612 29 100.0 37 ............................. AAAGAAATAATGATAGAGTACATTAAGGATAATGTTA 5279546 29 100.0 37 ............................. TCGTTTTTTACATAGTTGTATGTTCTTTGAATTCCAT 5279480 29 100.0 38 ............................. AAAGATTGGAGTGTGCCAGTTCCAATAACTTTTAGAAC 5279413 29 100.0 36 ............................. ATTGAAGAAATTAAAGAATTGAAAGAATTATAATCA 5279348 29 100.0 36 ............................. AAAGGAGATATACACATGAATAAAAGAGAAAGAATA 5279283 29 100.0 36 ............................. CTGGACCATATGTTTAATAATGAATCAGTTCAGTTT 5279218 29 100.0 37 ............................. AAATTTTTATATTTCATAATGAAGTCAATCGCATCAC 5279152 29 100.0 38 ............................. GATAGAATGGCTAATATTATAAAAAAATTTCTTAATGC 5279085 29 100.0 36 ............................. TGGAGTAATATTCCCTTTATGTTCTATATAAATTTT 5279020 29 100.0 36 ............................. CATATATAATTTAACAGATTTATAAATTTTGTCAAT 5278955 29 100.0 36 ............................. CCTTTTAATATTGTCTAAAACTATCAGATTTCCAAA 5278890 29 100.0 37 ............................. TCAATATATTCCATGTTATAAACGTCATAATGTTCTA 5278824 29 100.0 36 ............................. ATAGGATAAAAGTTAGAGTAGATTTACTAGTAAAGG 5278759 29 100.0 36 ............................. TAGCTCCACCGCTTGTAGCTACAACACCAACCATAG 5278694 29 100.0 102 ............................. TATTATTATCGTATTTATCAGCTTTCAATAAGATAAATGCAACTACATTTAAACAGAATGTAAATTATTATTATCGTATTTATCCCAAAGCCAATAGTCTAA 5278563 29 100.0 36 ............................. TAAGATGGTTGATAAGACTATACGTGAATATTATGA 5278498 29 100.0 37 ............................. AATGCTTCTAAATCACTTATGACGCGTTGTTGCATAG 5278432 29 100.0 36 ............................. CAATGAGTTTAGATGATGAAAGTTTAACATTAATTG 5278367 29 100.0 36 ............................. TTAGATCATCTATTCAATAATGAATCAGTTCAATTT 5278302 29 100.0 36 ............................. ATTAAATGGTTGCTTAAGAATAATAAAAGATATCAC 5278237 29 100.0 36 ............................. CATTCTCCTATCTCAATAAATGAATTATTATTTTAA 5278172 29 100.0 36 ............................. ACGCAATCACCATTTAATATTAAAATTCTGAAATCT 5278107 29 100.0 37 ............................. GTGGAATGTTGCCATCCACGTTACAATCTTGTGTTTT 5278041 29 100.0 37 ............................. CTTTATGAATTTAAAAATACTGATATATCAAAAGTAA 5277975 29 100.0 37 ............................. ACCATATTAGCCATTTTAGCTTCAAATGATAAATTTG 5277909 29 100.0 37 ............................. TTTTCCTCAAAAGAAAGCTTATCCTTATCGATTGAAG 5277843 29 100.0 35 ............................. GCTTACGTGGCAACATACAAAAAGTTTCTTTATAC 5277779 29 100.0 37 ............................. AACTTTGTTATAGCTTCTAAAGAAAATATTATTACTA 5277713 29 100.0 37 ............................. TGATTATAACATTATCATTGATGATATTTTTGTACAA 5277647 29 100.0 37 ............................. GGCATATATTTTGTTGTTGTATACTCAAAAATGTGAA 5277581 29 100.0 36 ............................. TGCATTAATACCATCATGCCCGACATTGCTTCTTGC 5277516 29 100.0 36 ............................. AAAGGTACAATAGATAGATTTACAAGTGATATTTAT 5277451 29 100.0 37 ............................. TTGGTATCAAGACTAGTTTCAATAATTATTTTTCCAT 5277385 29 100.0 36 ............................. ATTACTAGAATGGGAGGAAAAAGCAAATTAAGAAAC 5277320 29 100.0 37 ............................. TTTACTGGCTCCTTTGTAGCCCCTTCTAGTGTAAATT 5277254 29 100.0 37 ............................. CTGTTCTGCCTTCTTTTTGTGCTTTGGATATTTCGGA 5277188 29 100.0 36 ............................. TATATTTATTACATCAGTTAAATTTATTTCTCCTTT 5277123 29 100.0 36 ............................. AAATTATTATATGTTTAGAGAAATTGGGTGGGCTAA 5277058 29 100.0 37 ............................. GAATGATGTGAACCACCACTACTTCCACCAGTTGTTG 5276992 29 100.0 36 ............................. ATTTTAATCTTTGACCATACTACTATTTCTCTTTTA 5276927 29 96.6 0 ..........G.................. | ========== ====== ====== ====== ============================= ====================================================================================================== ================== 60 29 99.9 38 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : ATAAAAATGGCAATTGAAAATGAAGAATATAAGCCATTAAAGGCGTGGTGGTAAGATGTTTATAATATTAACATATGATGTTGGAGAAAAGCGGGTAAATAGAGTGCGGAAATGTTTAAAAAAATACTTAACTTGGACTCAAAACTCAGTATTTGAAGGAGAAATAACAGAAGGAAAATTACATAAATGTCTAGCTGATGTTAATAAATTTATAGAAAGAGATGAAGATTCACTCTATATTTATATGGTTAAAAATATTCACAATATAAAGAAAGAAGTAATAGGACAGCAAAAGAATTATGATGAGCTATTTTTGTAGTTGCAGTAAATCAATTTTGGGTAAAAGATGTTTTAAATCAGCATAAATTCTAGCTTTAGAGTAATAATATCTATAAACACTATTTCCATACTAAAGGTTTACCGCAAGAATATAAAAATTAAATCAAATTTATCAGCGATAAATGGCTAATTTACTAGAGTTATGGTATACTTTTTTTAGG # Right flank : TATGATGAAAAATGAACAATAAAAGATTCAGCTATTGTTTTATATATTGTAATTCAATAAAATTATAATAAGTATGTTATAGAAAAAAATATATGACATAGTGATGCAGCACATCAAAAATTATTTAAATATATATAGAATGACTAGCAATGGATATCTCTTATTATTTAATTTTAATAAAAATAAATAATAAGAGTGAAAAATATTTTATATAATAAACAAAATATTTGAAGATAGAGTATAGTTGATACGTTGACAAGGAGATAAGGAATAATGACTTTACAACAATTAAAATATGTAGTAACCGTTGCAGACAAAGGAACAATTAGTGATGCAGCTAAGGAATTATTCATTTCTCAGCCTACAATTACTAATGCTATTAAAGATTTAGAAAAGGAAATGCATATTACTATATTTAATAGAACTAACAAGGGAATTGTAGTTTCAAATATAGGAAATGAATTTCTTGCATATGCAAGGCAAGTACTTGAACAAGCTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //