Array 1 202953-205308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCL010000002.1 Prevotella denticola strain SCHI0027.S.12 Contig_2_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 202953 37 97.3 34 ............A........................ AATTGACCAAATTGTAGATGTGGACGAAAACAAC 203024 37 100.0 33 ..................................... AATTATGGAAAAGAAGAATGTTATCGAGAGTTT 203094 37 100.0 36 ..................................... TATTGCTATTCAGGACTACTCACCTAAAATAAAGGA 203167 37 100.0 34 ..................................... AGCGTGAAATCATGGAGTTAACAAAAAATTTCGC 203238 37 100.0 37 ..................................... GTTATTAAATTTCTCTACCTCATCTGCATGACGTTGC 203312 37 100.0 33 ..................................... AAAGGCACTTTATTTTATCTTTGACTTATTGCA 203382 37 100.0 38 ..................................... AGTTCGGGTCGAAGATCCAAAAAACCTAATAAGGTTGA 203457 37 100.0 38 ..................................... ACCGGAATTTTATTCCAGAAATAATGGAGATTACAAGA 203532 37 100.0 33 ..................................... TAATATATCCTTGTTGTTGCAATGATTTTACCC 203602 37 100.0 36 ..................................... CGTGCGTCTTGTCGTTGTCATGCTTGCTTCGTTCTT 203675 37 100.0 36 ..................................... GTCGGAGGGCTATCAGGTTGTCGGGGATTCTTCTTA 203748 37 100.0 29 ..................................... TTGCAACAACAAGGATATGCGCGCGGCAA 203814 37 78.4 37 .CAGCTG..T.A......................... TTTGCCGGAGGCTTTGGCAGACTTCAACGAATCTGCC 203888 37 100.0 34 ..................................... AAATAAATTTTAACTTAAGCCCTCGACAGCACGG 203959 37 100.0 38 ..................................... CAGGATGCCCGAAATAATTTTAACTTTAGCCCTCGACA 204034 37 100.0 34 ..................................... TTTGCATTCGTTGCAGGAACGCCAGCTAATGAGA 204105 37 100.0 39 ..................................... TGTTAGGAAGAATTATCCAGAAGTCGAAATGATAAAGCC 204181 37 100.0 36 ..................................... GTTCGGGTCGAAGATCCAAAAACCTAATAAGGTTGA 204254 37 100.0 35 ..................................... AATCTACCAGCAGACGGTTGCGAAAGTAACGAGGG 204326 37 100.0 35 ..................................... GTCAGGACGCTTCAAAGAAGCTCTTGCTATTATAA 204398 37 100.0 38 ..................................... CTTATCGATTCTTTGAGGAAAAAGAATCATTTTCTTGT 204473 37 100.0 36 ..................................... TCCTGTACAGATTTGGAGGGACAAAAACGGGTAGCA 204546 37 97.3 38 C.................................... TAAGGCTTGAAAATATGCTTTAATGCCAAATGCTGCCT 204621 37 100.0 35 ..................................... CGCAAGACAGGTAAATCTATCGGTGAACTCAAAAA 204693 37 100.0 32 ..................................... TTCGTCGACAAGCCGTTCATCAAGAACGCGGT 204762 37 100.0 39 ..................................... ATTATTAAGTTTTTTATGGGGTCGTCGGCGAGCGAGGCA 204838 37 100.0 34 ..................................... AGAGTTTCGAGAAAGCAGCCATCGCTCGTTTTGG 204909 37 100.0 37 ..................................... CAGCATCGGGTCGATGTTCTCCTCTTTCAGCTTGTCG 204983 37 100.0 37 ..................................... ACTTTGTAAAGCAGTGTACGTAGGACCGAACAAAGAT 205057 37 100.0 37 ..................................... GGCAAGAACGTTACGGTTCTTAAGAACATTGCCACAA 205131 37 100.0 32 ..................................... TCCGGACTGTCTCTTCGTCCGGGGCTGTGAAG 205200 37 94.6 35 CA................................... AGTTCATGAAGTTGGGGTTCTTGACCGTTGTAAGG 205272 37 94.6 0 CA................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 33 37 98.9 36 GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Left flank : TTCTCCGAGATAGTCTGCCCCGCAGCCGGCATCACATCATAGAAAAAGCCGTTCTCCACTGCCGGGCCGAAGCCGAACTGAATGCCCGGATAGAGTTCCTGCAATGCCTCGGCAAGCAGATGGGCAGAGGTGTGCCAGAAAGTGTGCTTGCCTTCTTCGTCATCGAACTTGTAAAGTGCGATGGTCGCATCTCCATTGATGGGACGGTTCAGTTCTGTCGTTACGCCATTGACACCGCAAGATACAACGTCACGGGCGAGAGCCGGCGAAATACTCTCGGCAATTTGATAACCAGTCACCCCCTGTTCGTATTCACGAACGGAGCCGTCTGGGAAAGTGATTTTAACCATACTACAAATTAGTTTTATAAATCAAATGTTGTGGCAAAGGTACTACTTTTAATTTATAAATCATAATTTTTTTGCCCCCAAAGGCTCTTCTTCCGAATCCTTGTTCTAATATTGAGTGAAGGTTGAGGACGCAAAGCGAATTCTTGCAAA # Right flank : GAGTAAAGACTTGTATTCCTTTATATGCCGCAGCCCCATGCGTGTAAGACCTAAAAATGCTTGAGGAATTAAGAGAAATTAACCATATTCCAAGCGAGTGCAAAGGTACGAAAAACTGTGCAGAAAGTCAAAGATCGATGCGTTAAATATTCTTTATGGAGGAAGCATTGCTGCTGCTTTCCCTCATGGGGAGGACATTCTTCCCTGTTGTAGAAGGTATCCTCGCTGCCATCTTCAGAAGAACAATGTGTTGCGCGAACGGATGATGACATCTATGCTGATGTCTTCACCGATGATCTGCATTGCCCGGATCTGATCGGTGGAGACAGGACAGACGATGATGCTGTCGTGGTTGTCGTAAAGCGACTGCACCTCGGCAAGGTCTCTTTTAATTTCATCGTAGACGGTCTTGTCGAGGTCGGCAAGGAAGATGGAACGCTGGATGCGTGTGCATCCTTTCCGTTCCAGGTATTTTGCGATATGATAGCGTACCTTGTCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 40643-43070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCL010000024.1 Prevotella denticola strain SCHI0027.S.12 Contig_24_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 40643 47 97.9 30 ...................T........................... TGCCTTAATTAATTAATTATTAACTATCAA 40720 47 97.9 30 ...................T........................... TTGCGTACTCTTTTTGTACGTTCTCCAAGT 40797 47 97.9 29 ...................T........................... AGTAGGAACAGAGGAAGGGATATACTTCC 40873 47 97.9 29 ...................T........................... ATTAAATAAATCTATGATGCAAGACCTTA 40949 47 97.9 30 ...................T........................... CTTGTTGCATAATACGCATTGTTTTGACTA 41026 47 97.9 30 ...................T........................... AAAATAATCATAAACTACACAAAAAATCAC 41103 47 97.9 30 ...................T........................... GTGACAACGTCGTAACGACAAACATAAGGC 41180 47 97.9 30 ...................T........................... TTGCCGCTGAGCAGCAGGCGTAGAATAGTC 41257 47 100.0 30 ............................................... TTATGCCGGGAGAGTTACATACAATTGCAG 41334 47 100.0 30 ............................................... TACGTAGAGGGTTTTGTTGAGGTTGGCGGC 41411 47 100.0 30 ............................................... CACCTTTCGGTACGTTGTAGTTGTCAACTG 41488 47 100.0 30 ............................................... CACAAATTGAAAAATTATCATTAAATTTGT 41565 47 100.0 30 ............................................... CGTTACCGTCAATATCTTTATACGCTGCTT 41642 47 100.0 30 ............................................... AGATGGGGTAATCTGAAAAAGAAGATCTAC 41719 47 100.0 30 ............................................... GTCTGGTATAGAACAGGCAATCGGGCATAC 41796 47 100.0 29 ............................................... AACAAGAGAATCGCCAGTAACAACACCAT 41872 47 100.0 30 ............................................... TGTTGAAAGAAAAGCAAAGGCAACAGATAA 41949 47 100.0 30 ............................................... CCATCTTGTCCGTTCCTACCTGCTGCACTA 42026 47 100.0 29 ............................................... AAATATATACAGGAATCAATGACTACTAT 42102 47 100.0 30 ............................................... GGTTTGACAGATGATGATCTGCTTGAAATT 42179 47 100.0 30 ............................................... AAATAGGATTGTCGAATCCGCCGATAAAAT 42256 47 100.0 30 ............................................... GAAAACGCCTTTGTGAAATGTTCAGATCCT 42333 47 100.0 29 ............................................... TTGAAAAAACACGCCTCGAACTCAAATCG 42409 47 100.0 30 ............................................... GTATCATCAAGCTTGATGTCAGTAACGAAA 42486 47 100.0 30 ............................................... ATCTATCAGCCTAGTATAAGTTTATCTGGG 42563 47 100.0 30 ............................................... ATTTATACGCCTCTATCTGCTCTGTAAGCA 42640 47 100.0 30 ............................................... CTTAAAGAAGTACTTTGTCAAGAGAGTGAA 42717 47 100.0 30 ............................................... AGTATCTGAACTGTAAGGCTCAACTAATTA 42794 47 100.0 29 ............................................... TTTAATTGGAGAAATAATCGCCCCAGCTT 42870 47 100.0 30 ............................................... GATGAAGACACCTGTAGGTAAACAGTCACA 42947 47 100.0 30 ............................................... TATGTAAGTCAGTATTATACTTTCATGTCA 43024 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 32 47 99.5 30 GTTGTGAATTGCTTCAAAAAGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : CAGTGTCTTGCTGTATAGGATAGTGACTGGATTAAACCGGCCTTTCCTGCAGATGTGCTGATGCCAGACACTTATGGAGTTGCCGACAGACACCGGGCGTGTTGATGGCCCGCACCATGCCATATATTGCCGGGAGGGGAGCCAACTTGCAGCTGGCGAAGAGCTGTGCCGGCAGAACTTATTTCATCAGGAGATTACTTTTCCGAAGACAATGCGGAATGGTCTGTTCAAAAGAGATTGCACAGGGGGATCATGCTGTTTGAGTTTTATCGGACAGCATTCAATAAACATAAGTGCAGGAAACGGAGATAATTTATGGATTCGGCAAACGGTCATCCCTTCGCAGCAAGCCTATACGCTCTACGCAGCAGCCAACTACACATTCCTGAAAGCCAACTACGCCATTCAACTGAAAGCCAGGAATAAATCTGTAAGGCAGCAGGCAAGACTGACCAAAAGTCAAAACACGAGTTTAGGTTTACAAAGTCGTCCGTTTGGTG # Right flank : TTTTTTGCTAGAGACTGGGCAGACAATGGGTCAGTCCTAAAACCCAGTTGCAAACCTACTTCTCTTAAGCGCATAATTTCATAAGTATTTATTACCTTTGCATCATGAAGAGTGACCAACTATTACGTTGCATCTTTCCAGATGTACTTGCCGACTACTTTGATGTTGTCGATATTCAAGAGGGTGTTTCCCAGTTTGACTTTTGGCTTGACGAGCGTAACTTTATGGAAAAGTCAGACCATAAGTTAGGCACTGTAAGCAGTTATGGTTTTACCAGCGAGCGTGTAATTCAGGACTTTCCTCTTCGTGGCAAAGCCGTCTACCTCCATGTTCGCCGTCGCAAGTGGCGTGACAGTTCCAACGGAGAGATATTTACTTATTCATATGATGACTTGACGGCTGAGGGCAGTAAACTATCCCCCGAGTTCGTTTCTTTTTTAAAAGAATAGAATTGAGTCCACTGCAGAGAGCATCGCAAGCATCGGTGCGCACTATGGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAAAGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 128458-123338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCL010000005.1 Prevotella denticola strain SCHI0027.S.12 Contig_5_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 128457 47 100.0 30 ............................................... TCAGCATAAATAGACGACATGCCAATTAAA 128380 47 100.0 29 ............................................... TAAGAGACAAATTACCGGTCAAAGCGCCT 128304 47 100.0 30 ............................................... GAAAAGTAGAGCGCAACCGAAACAAGAATG 128227 47 100.0 30 ............................................... TACATACGAGACAGGCTTTCAGCTTTGTCG 128150 47 100.0 30 ............................................... TTGTTCGTGACTGTTATCGTGGAAGTTTTT 128073 47 100.0 30 ............................................... TTGTTACGATTGTTCTTGTCGATATTGTCG 127996 47 100.0 29 ............................................... GACCGGAAAGAGCACCAACACCGGCAGAA 127920 47 100.0 30 ............................................... ATCAAATTAGAAGAGGCAGAAACAGTAGGC 127843 47 100.0 30 ............................................... TCACTAATCATGTGGGAGATTAAACGCAAT 127766 47 100.0 30 ............................................... AGCTGACGAAAATCATCCATGCTGTAAGTG 127689 47 100.0 30 ............................................... GTTAAAGCGCCTGTAGCGGCACTTAAGCCA 127612 47 100.0 30 ............................................... CACAAGTTCCAGCACGGAGTTCGATGTCAG 127535 47 100.0 30 ............................................... GCGAGGTGATAACGCAAAGACTTGCACGCA 127458 47 100.0 30 ............................................... GTCTGATGCAACAGGCGGAAAGGCGGTGAT 127381 47 100.0 30 ............................................... AAAAGACTTACAGCGACAGGCTCGTGACTA 127304 47 100.0 30 ............................................... TTCATATCATAAGTTTGATGACCGTTGACA 127227 47 100.0 30 ............................................... TAATGCGTCTTGATATACTCATGAATGCGA 127150 47 100.0 30 ............................................... TATTTGTTGAACAAGTATCTGTATGATTTT 127073 47 100.0 30 ............................................... TTCATATCATAAGTTTGATGACCGTTAACA 126996 47 100.0 30 ............................................... ATGAGCAGATGAAGAAGCTCATTGACAAGT 126919 47 100.0 30 ............................................... AATGCGACAGGCAGCTCAAAGACAGGAGTG 126842 47 100.0 30 ............................................... TCACAAGAAAATGGTCTGCACTCGAAGCAG 126765 47 100.0 30 ............................................... TGGAGATAAAGGACGGCGAGATAACCCTGA 126688 47 100.0 30 ............................................... TCTTCCCGTTCGTCAAAACAAAGCGATTTC 126611 47 100.0 30 ............................................... TTGGGCAAGTACAAGCTATCGTATAGAAGG 126534 47 100.0 29 ............................................... AGAAGGTCTGACTGGAGCTGCTTGCTTGA 126458 47 100.0 30 ............................................... CCTGAAGTCCCCTTCCGTTTCTGTTTACCG 126381 47 100.0 30 ............................................... CAGTGTTCGCAGCTTGCTGCTGATCAGCGA 126304 47 100.0 30 ............................................... CGGCTGCAGCTCCTTGTTGATGGTGCGCTT 126227 47 100.0 30 ............................................... AGGATTTGGAGGAACAAGGTAAAAGCATGC 126150 47 100.0 30 ............................................... CAGACGATGCGGAACTGAAAAAATGGGATT 126073 47 100.0 30 ............................................... GGTAGCTTAGCTTCGCCCACCACATAGTCG 125996 47 100.0 29 ............................................... TGTCATTTCAGCTTTAGTCATGCCGAACG 125920 47 100.0 29 ............................................... CGGCAGGTCTCCTACACCGAGCAGCAGAC 125844 47 100.0 30 ............................................... ATGGCAGTGGAAGGCCATCAAGACCTATAT 125767 47 100.0 29 ............................................... CATTTCGTAATGACCTTCGTTCCTCGCTC 125691 47 100.0 30 ............................................... TCCCTCCACCAATTTTGTGGGCAATCTGCT 125614 47 100.0 29 ............................................... CGGATTCACGAGTACATACGTACGCATTA 125538 47 100.0 30 ............................................... GTAGGAACAGAAATAGGAACATATTCCTTT 125461 47 100.0 30 ............................................... CGGACTGGCCGTCAACAACGTCTGCACCCT 125384 47 100.0 30 ............................................... ATTCGAGATGAGGTCCTCTGCTTCGAGGTC 125307 47 100.0 30 ............................................... AGTTCAAGAATCTGAAGGAGGACATTCGAC 125230 47 100.0 30 ............................................... TCAAATGCGTTTGGCAGAAACAGGTAACGT 125153 47 100.0 30 ............................................... ACTCGATAAGGTTATACTCCTTTTCCATAC 125076 47 100.0 30 ............................................... CGCTTGGTCATGGCATGGGTAACAGGACAA 124999 47 100.0 30 ............................................... CGCTTACTCCGAATTGCAGACGGACTGGAA 124922 47 100.0 30 ............................................... AAAATGGACAGTCCGTCGCTGTCGACACCG 124845 47 100.0 30 ............................................... CGGTAGAGAAGAAGTGAGTAGCCTCGGCAG 124768 47 100.0 30 ............................................... CGTTGCCGTATAGTTCGATACTGTCTGTCA 124691 47 100.0 29 ............................................... CTAAACTTAAAGTTTCGACAACGCTTAAT 124615 47 100.0 30 ............................................... AACTTAAAGTTTCGACAACGCTTAATTGCC 124538 47 100.0 30 ............................................... ATATTTAACGGCTGTCCCGTGGTTCTGAAA 124461 47 100.0 30 ............................................... TGAGTACATTAAAGCACAGTTAGCGATATA 124384 47 100.0 30 ............................................... AGCCGTCCGCAACGACCTTTGTCGCCTGCT 124307 47 100.0 30 ............................................... ATTATGCCTTAACGGTTGTTTTCTGCCTTT 124230 47 100.0 30 ............................................... TATAGTTGAGTACCCCCGAGTTTGCAAAGT 124153 47 100.0 30 ............................................... CGGCAGCAAATGGCACAGAACTTTCTCTGC 124076 47 100.0 31 ............................................... ATAAGAATAGCGGTTTGTAAACAAAGCCGTT 123998 47 100.0 29 ............................................... TCGTATGCTGCAACAGTGGCGCAAGACTT 123922 47 100.0 30 ............................................... ACAGAACCCACAGAGGTCACGACCGTAACC 123845 47 100.0 30 ............................................... CATGCTCTACGACTTCATCTACTTTACGCT 123768 47 100.0 29 ............................................... AGTACGTCTTTTGTTTATCTCTACCACGC 123692 47 100.0 30 ............................................... AAGTGTTTCAAGAAAATAATTCTAAACCCT 123615 47 100.0 30 ............................................... AGGCGTATAACGTAACGCAAGAGCATATTG 123538 47 100.0 30 ............................................... CTTTTCAAGCCTACCGATTATATCCTCTTT 123461 47 100.0 30 ............................................... CGCAAGCAGATTGAGGTCGTTAAGTCGTTG 123384 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 67 47 100.0 30 GTTGTGAATTGCTTCAAAAAGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : GCAATGGTGACACGCGTAAGCAGTTGCTCGCCAGGGCAAAGTTCATATTGACCAAGCACAAGACCAAGTGGACTGAAGCACAGAAAGCCAGGGCGGAAATCATCTTTGAACATTATCCTACACTGAAAAAGGCATATGATCTGGCTATGAAACTTACCGATATTTATAACATCAAGAGCATCAAGGATGCTGCAAGACTGAAGCTGGCTAAATGGTTCAATGAGGTTGAAGAGCTGGGAGTGGACAATTTCTACACGGTGATTGACACGTTTGAAAATCATTATCAAACCATACTCAATTTCTTTGTAAACAGAGCAACAAATGCAAATGCTGAGTCATTCAATGCCAAGGTTAAGGCATTCAGGGCACAGTTCAGAGGAGTCACAGATATTCCTTTCTTTTTATATAGGCTTATGAAATTGTGTGCTTAAGAGAAGTAGGTTTGCAACTGGGTTTTAGGACTGACCCCAGACAATC # Right flank : TGAAAATAAGTATTGCTCTGATTCTCAGTTAGTAACATTGTTTTTGTGCAAAATAAAAACTGCAATCTAAAAGAGTCCTATTGGTAATGATAGGACTCTTTTTCTTTTAGAATAATTCAAGTTGCTGCCCAGGAGCGTTGGGTGTTTGTGCCTGTGTCCCACAAAAAAGCTCTATCTCACCAAACTGTTTGTCTGTAATAACCATAATGCAAACATTACCAGAATTAGGCATAAAAGACTTTACTCGCTTCACATGTACATCCGCATTCTCTCTGCTTGCACAATGACGAACATAGATTGATAATTGAAACATAGTAAATCCATCTTTCATCAAATCTTTCCGGAAAATAGTATAAGCACGCTTTTCCTTGTTTGTATTCGTTGGAAGATCAAAAAAGACCATTACCCACATAACCCTATATTCGCTAAGTCGTTGCATCAAAGAAAAGAAGGATAAGAGATTTCACGAGCTTCCCCATTATAGCACTTCGCAAGACTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAAAGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //