Array 1 1699113-1693660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014352.1 Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 1699112 36 100.0 38 .................................... GTCCCAGTGCATCCCGGCCTGGACGACCCCGCGCGGTC 1699038 36 100.0 36 .................................... CGACTACGAGGTGCTCGGCGATGGCGCGGATGACGA 1698966 36 100.0 37 .................................... CTCCTAGTAGTGAGGTGTGGCGGGGGGGCGTCACGTA 1698893 36 100.0 35 .................................... GAGCTGGTAGTGACGGACAGGTCGTCCACGCGGAC 1698822 36 100.0 37 .................................... CCAGGTCCTCACCGACTTTGACGTGCGACTCGTAGGA 1698749 36 100.0 36 .................................... CGTCGACTTGGCCTTCACCGCGCAGCCGGGCAGACT 1698677 36 97.2 38 ...............C.................... CTTGAGGACTGCTGGCTGCACCACAGCAACGTCAACCG 1698603 36 100.0 37 .................................... CGGCATACATCGCCGAGCACGGATGCCCGCCCGGCAC 1698530 36 100.0 36 .................................... ATGCCCGCAATGCAACCAGGAAGACGCCAGAGCCTC 1698458 36 100.0 35 .................................... CGGTCCGCCCACCACGCCGGGGGCTCGCTCTCGAA 1698387 36 100.0 37 .................................... GCGCACACCTGACCACCACGAAGACGTCGCGCCATGG 1698314 36 100.0 38 .................................... TCCACGGTGCGCACCTACGCATCGACCGTCCACCGCTG 1698240 36 100.0 34 .................................... CGGAAGTCATCATCGTCAGATTGACGAGCAATTG 1698170 36 100.0 38 .................................... GGCCAGAACTTCGCGATGGTGCCCTACTGGCTCCTCAT 1698096 36 100.0 35 .................................... TAGTGGGCGCTACCGCCCGAGCTGCTCGACTGGAA 1698025 36 100.0 36 .................................... GCGCGCCCAGATGGAGGAGCCACTGGCACGCGACCT 1697953 36 100.0 35 .................................... GGGAAGTCGATGGTGAACAGCCTCAATCTGGCGGC 1697882 36 100.0 36 .................................... GCGCCGATGGTGCCATGATCGGCCCAAATTTGGGAT 1697810 36 100.0 36 .................................... ATGAAGGAGGCGGCATGAGCGAGGCAGTGCAGGAAT 1697738 36 100.0 36 .................................... ATGAAGGAGGCGGCATGAGCGAGGCAGTGCAGGAAT 1697666 36 100.0 36 .................................... TTGGGCGACCGATGGCTTCGATTCCACCATCACCGT 1697594 36 100.0 37 .................................... ATGGCCGGGATCCCCCGGGAAGCGCGGCGTCGTGGCC 1697521 36 100.0 36 .................................... CGGCTCAGTCACAGCAGTGTCATTCGGTCCCGGCCA 1697449 36 100.0 37 .................................... ACCTGGACCATTCCGCCGATGCCGATGTTGGTGACAA 1697376 36 100.0 35 .................................... ATCGTCACCTTCAGGCCATCCTCCGACACGTCCGT 1697305 36 100.0 39 .................................... TTCTGAAGGAAGAGCTTCAGGCATTGCACACTCCTAAGA 1697230 36 100.0 35 .................................... GCCGTCAGCGACTTGCCCGAGCCATTCGCCCCGAC 1697159 36 100.0 35 .................................... GTCGTAATAAGTCATACTTATTCCCCATCATCGTC 1697088 36 100.0 36 .................................... TTCCTGCCCCATCAAATGAAGCGAATCAGTATCAGC 1697016 36 97.2 35 ....T............................... TCCGGATGACGACGTTTCGCGCCTATTTTTAATAC 1696945 36 100.0 35 .................................... GTGACGGCGTATCGGGAGGGGTACGACGGGCTAGG 1696874 36 100.0 37 .................................... ATGGGGCAGGAATTGCCGGACCTTGATATTCATGATT 1696801 36 100.0 36 .................................... CGCAGTACTTCGAGCCCGAATGGACCACCGTGTGGC 1696729 36 100.0 35 .................................... TTCTCGGCAGCCAGGGCTGCGCGGTTGATGGCTGC 1696658 36 100.0 33 .................................... TTGGCGCGGGGCCGGGCGGCTCCGCCTTGATTA 1696589 36 100.0 35 .................................... CTCGCCGACCGCGAGGCCTGGCGCTGCGGAGACGC 1696518 36 100.0 35 .................................... CTCGCCGACCGCGAGGCCTGGCGCTGCGGAGACGC 1696447 36 100.0 35 .................................... ATCTCGATCAGGTCGTCGGCGTCATGACGGGCCAA 1696376 36 100.0 37 .................................... ATGGGGCAGGAATTGCCGGACCTTGATATTCATGATT 1696303 36 100.0 36 .................................... CGCAGTACTTCGAGCCCGAATGGACCACCGTGTGGC 1696231 36 100.0 35 .................................... TTCTCGGCAGCCAGGGCTGCGCGGTTGATGGCTGC 1696160 36 100.0 33 .................................... TTGGCGCGGGGCCGGGCGGCTCCGCCTTGATTA 1696091 36 100.0 35 .................................... CTCGCCGACCGCGAGGCCTGGCGCTGCGGAGACGC 1696020 36 100.0 35 .................................... CTCGCCGACCGCGAGGCCTGGCGCTGCGGAGACGC 1695949 36 100.0 35 .................................... ATCTCGATCAGGTCGTCGGCGTCATGACGGGCCAA 1695878 36 100.0 35 .................................... TTCTGTCCTGGCCGCCCGGCGTAGGTGGTGATGGC 1695807 36 100.0 40 .................................... TTCCCGCCCTGATGGCGTACTTCACGGCGGCGCCACGAAA 1695731 36 100.0 36 .................................... GTTCGGGATCTTTTAATAGGGGCGCCCGCGCACTGT 1695659 36 100.0 37 .................................... CCCGCGACATGTCGATAGCCATTTCAGCCACCTTCCA 1695586 36 100.0 34 .................................... GTATGTGCCGGTCTGCGCCAGAGTGGATGATGCG 1695516 36 100.0 35 .................................... ATCGGGACGGGGTCGATCAGGTCGGTGCCCAGCTC 1695445 36 100.0 35 .................................... TCCTCGGCGGCCTTGACCTGTGAGGAGCCGGCGGA 1695374 36 100.0 35 .................................... GCCGACCGCATCGAGACCGAGTCGCAGTGGCCGAA 1695303 36 100.0 35 .................................... TGCTGTGGTGGCGCCCGGGGCCTTGGTAGCGACGA 1695232 36 97.2 34 ..........................T......... GTTTGGTGGCCTGTTTTCCGGACTTGGCTGTCCA 1695162 36 100.0 34 .................................... CGGCGGTCACCCAGTGGGGTCCGTCGTCGGGCAG 1695092 36 100.0 38 .................................... TCCGAGATCCAGCCCTCGTGCTCAGCCTGAGATGCGGC 1695018 36 100.0 52 .................................... ATGACGGTCCCGTCACCACCGTCGTCTTCGAGACCGACCGCGTCGTCCCCAC 1694930 36 100.0 39 .................................... CGCTGGGCATCGACTACGGCACCAACCATCCCACGGCCG 1694855 36 100.0 36 .................................... GCCGAGGAGGTGTGAGGAGAGAGATGTAGGGGACTC 1694783 36 100.0 38 .................................... GACACGTCCAGCCTGCCAGTCGGAACCGTGTTCGGGCT 1694709 36 100.0 37 .................................... GTGCCAGGTGGCGAAATGTCATCGGCTTCGGCCACGG 1694636 36 100.0 35 .................................... GCGAGAGGGTCTGTCGTGAACTCATGGCCAGAACG 1694565 36 100.0 36 .................................... CACACGACAAAATATCCAAATAGTATTGTTTTTCCC 1694493 36 100.0 36 .................................... AGAGCGCGACAGGGGCCGGTCGATGGGGTCAAGCCT 1694421 36 100.0 38 .................................... TTGTCGCGCCACTCCCGAACGCCGGCCGCCCCGTCCTT 1694347 36 100.0 35 .................................... CAGCGACGGCGGAATGGACACCTTCATGTCCTTCA 1694276 36 100.0 37 .................................... CAGACGGCGCAGATGACACCATCGCCTCCGTCCTCGC 1694203 36 100.0 37 .................................... GTCCTGGTCCGGGCCCTTCACCGGGGGAGTAGTGTCA 1694130 36 100.0 34 .................................... TGGGATCTGGAGGGTGAGCGCCTCTATGAGACCG 1694060 36 100.0 37 .................................... TGTCGCGGCCGTAACCTGAGCCTGCACGGCTGTGGTC 1693987 36 100.0 35 .................................... AGCCAGCGCTCCGGTGGCAGGTACTGGCCGGTCGG 1693916 36 100.0 38 .................................... TTCGACGTCACCGAGATGATGCAAACCGTCGGCTCGGG 1693842 36 100.0 37 .................................... CACCCGATGGTGCCTGGCCGTCGGAGTCCTCAGCGAG 1693769 36 100.0 38 .................................... CGGTCGGTGGCCCAGCGGAAGGCGCGGATGTAGGAGTC 1693695 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 76 36 99.9 36 GCCTCAACGAAGGGCTCCCCTGGAAAGGGGAGCGAT # Left flank : GCACCACGAGTCTGTTCGCCGCCCTGGACGTCGCCTCAGGGTCGGTGATCACCGAGCACCACGCCCGCCACACCGCCGCCCAGTTCATCGGCTTCCTGGCCACGATCGACAAAGCGGTACCCAAGAATCTGGAGCTGCACCTGGTGCTGGACAACTACGCGACTCACAAGACCGCGAAGGTCCACACGTGGCTGCTGCGTCATCCCCGGTTCCACCTGCACTTCACGCCCACGTACTCGTCGTGGCTGAACCTGGTCGAGCGGTGGTTCGCCGAGTTGACCTGCCGCAAACTCCACGGATCGGCCCACCGCTCCGTCACCGAGCTCAAGGCCGACATCCAGGCCTGGATCAACCAGTGGAACACCGACCCGAAACCCTTCATCTGGACCAAGACCGCCGACGCGATCTTCGAGTCCCTGGCCGCCTACTGCACCATCCTCAACCACACCACCGACCAGCCAGAAACTTCCGACTCAGGACACTAGGTCATTCCACCGCCG # Right flank : AGCGCTCGCGGGCAGGCCCTCCTGACAAGCCGGATAGTGCCCCGCCCGCGCGCGACCACTCTATCGCGTCCTCTCCGGAGCAGGACGCGCGGCCATCTCTACTGCAAATGAGGGTCCGACAAGGGAGGGCGCCTACGCGAGCGGTCCCCGGCAGTTGGTGGAGCCGGGGACCGCTCGCGCGACCTCAGACGATCATCGTCCCGTCCCCGACGATGTATCGGGAGTGGCCCAACCACGTCATCGCTCGTGCGTCTGCTGTCTTCGAGAGGCCAAGATCGCTGACGAGTACGGAGTCCTGGTCCCGGTCCATGATGTCCTCCAATTCGCGTTGCAGAACGAGTACATGACTCGGCGAGCAGTCCACCATGAAGACGCTGTACTGGACGCGCAGCCCGAACCGCTTCAGCGCTATCGCCATGTGGCTGCGTCGTCTGTCATCAGGTATGTCGTAGGCGACGAGGAAGCGATGGCTATCCTGCCTCATCGGACGGTCATCCCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGGGCTCCCCTGGAAAGGGGAGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 1701723-1700309 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014352.1 Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1701722 36 100.0 41 .................................... CTCGAGAAGGCACAGGTAGCCCAGGCCAAGAAGGCACTCGG 1701645 36 100.0 38 .................................... CGCACCAAGTCCCTGAGGGGCGGGATGTTCCGGCGGGA 1701571 36 97.2 37 .........................G.......... GGGCCACCGTCATCGCCCGCACCGAGCAGCTCGACGC 1701498 36 100.0 34 .................................... CTGTCGGCACCGGCTCGCCCGTCCTGCGCTGGTC 1701428 36 100.0 35 .................................... GTCCAAGCTGATCGGCCTAGGTCATTCCACCGCCG 1701357 36 100.0 35 .................................... GCCGGGTGTGATGCGGGGGGATATCCGAATCCCAC 1701286 36 100.0 35 .................................... CTGGGGAGGGTGGCGCGGACGCTGGCGACCCATCC 1701215 36 100.0 37 .................................... AACCCGCCTTCTGGTCCAACGGGCAGCCCAAGCTCAT 1701142 36 97.2 35 ...........................A........ AGCGCGCGTCCTGATGCGCTAGGTGCAACGATCTG 1701071 36 100.0 37 .................................... AACCCGCCTTCTGGTCCAACGGGCAGCCCAAGCTCAT 1700998 36 97.2 35 ...........................A........ AGCGCGCGTCCTGATGCGCTAGGTGCAACGATCTG 1700927 36 100.0 39 .................................... TGCCATGCGATTCCTCCCTGTCTGTGTGGTGCATTCGCC 1700852 36 100.0 37 .................................... AGGACGATTCGAAGCGGTGGGAATGGTCCACCAACTA 1700779 36 100.0 35 .................................... GTGACGGCGGCGGGGTTCTGTCCTGGCCGCCCGGG 1700708 36 100.0 37 .................................... GGGTGATCCAGCGCAGCACGGCGGCGCGGGCCACGTC 1700635 36 100.0 37 .................................... AACTCCGGTTTCATCCCGCGCATTTCATTCCATGCGA 1700562 36 94.4 37 ............................AA...... CCGCGTTGACGATCCGCCGGAACGTCTCGCTCTTCTT 1700489 36 97.2 38 ..........................T......... AGGGCGAGCGCACGGGTCGACTCGCTGGAGAGCTGGGT 1700415 36 100.0 35 .................................... GAGCGGCGGTAGGCGTGCGGCTGAGACGGCGTGCT 1700344 36 97.2 0 ........A........................... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 99.0 37 GCCTCAACGAAGGGCTCCCCTGGAAAGGGGAGCGAT # Left flank : CCCCCTGTTCGGGGTCAGGCTGACCCTGCACACGGGCCGGGACCTGCTCACCGACCGGCAGGCCGCCCGCCTGGATGCTGTGCTCGCCGATGACGCTCACGCGCCGGTCCAGGTCACCTGGGCGGTCTACCAGGAGGTCGTGGCCGCCTACCGCGCCGAAAACCGTGCCGAGGGGCGGGCGATCATGGCCCACCTGATCGACGCGATCGCCACCAAAGTCCCCGCCGCACTGCCCGAGGTCATCACTCTCGGCCACACGTTGAAGAAACGGGCCGCCGACATCCTGGCCTACTTCGACCACCCGGGGACCTCGAACGGCCCTAGTGAGGCCATCAACGGCAGACTCGAACACCTCCGCGGTATCGCCCTGGGCTTCCGGAACCTCACCCACTACATCACCAGATCCCTCCTGGAGACCGGAGGATTCAGACCCCGACTACACCCTGGATCCTGAAGAGCCGCGATGCGCCAAGTGCGGCCAGCACGGCCGCAGCAGCCGT # Right flank : GTCCAAGCTGATCGGCCTAGTGTCCTGAGTCGGAAGTTTCTGGTTAGTCTTGGTAGACTCTGGTCATGCCGAGTCCCAAGACTGAACCCGTGCACCTGACTGGCGAGGAACGTGCCGTCCTGAAGAGCTGGGCCCGTGGCCGCAGCCTGGAGGCCTGGCGGGCCCGCAGGGCCCGGATCATCCTGGAACTGGACGGTGGGGCCACGATCGGGCGGGTCGCCGAACTGGTGGGGTGCTCACGGACCACGGTGGGCAAGTGGCGGGCCCGTTTCGCCGCCGACCGCATCGATGGGTTGGAGGATGCGCCCCGCTCAGGGCGCCCCAGGGCAGTCTCCGACGAGCAGGTTCAGGCCCTGGTCGACCGGACCTTGCACTCCAAGCCGGCCAACGGGGACCGGGCCTGGTCGACCCGGTCGGCCGCACAGGCCGCCGGGATGAGTCAGTCGACGGTGTCGAGGGTCTGGCGGGCCTTCGGGCTGAAACCGCAGGCGATTGACTCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGGGCTCCCCTGGAAAGGGGAGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //