Array 1 333731-334032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFON010000002.1 Bartonella sp. W8097 NODE_2_length_531973_cov_239.451334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 333731 36 94.4 31 .C.T................................ CAAGATCGGCGCGCGGCCAATCGGAAGAAAT 333798 36 100.0 30 .................................... GATGAACGTATTATCGAGCTGGCGAAACAA 333864 36 100.0 30 .................................... CATAACCTCTTCGCCCCGGACAGCGGCCGA 333930 36 100.0 31 .................................... TTTCATTAATCAGGACTTGTCTATTGACACG 333997 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 98.9 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CTTCTATTTCTGATACTTTTTATAGAATATATTTTGGACCTGTTGTATATAACTGGTCAACATTGGTGGGCGGATTTGCCGTAATGGCTGCTGTAATATATTTTTTTGCACAAGATGGGTTACTCTCTCGTTTAATTTCCAATAAGTTATTTGTTACATTAGGTGAAATAAGTTTTTCTATATATATGTGTCATCAGATAATACTGGTTTTTTCCAGTAGTCACAACACCGTACTTTTTCGTTTTTCCGGCGGAATAAATTTTATATTATATTTTTTATATGTAATTCTTTTATCTTATGTAATATGGGTTTTTATAGAAACACCTATAAGAAAATTTATAGTAGGCGGGAAGATTGTTCATAGGTCAAATCTTATGAGCGAAACGATGAAAATTAATAGTGTTTTCAGCCTTTATTCTATTATCGCTTTGGTAGCGTTATTATCTGTATCCTTCTACATACATTCGTTACTCAGGTAACTTGATGCGCTAATAGTTTCG # Right flank : CCGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAATTTTCGATTTTTTTGACGTGTCTTCCACGTTTTCTCTAAAAATCTAACAAGATTTTCACATAAGTGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATAGCTATGTTTCTGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGGAAAAGCAAAATTTGACGACACCGTTCGGTCGCCTCCCCCCAACACCAAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 334653-335482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFON010000002.1 Bartonella sp. W8097 NODE_2_length_531973_cov_239.451334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 334653 36 97.2 30 ..C................................. CGGCTCCCAAGTCTTTCAATCCGCCAATCG 334719 36 100.0 30 .................................... GCTTTATCCAGTGCTTCCTTTTGTTTCGGA 334785 36 100.0 30 .................................... AATCGGGCACATACGGTAGGCCTTGACTGT 334851 36 100.0 30 .................................... TCATGTTGTGAGCCTTTTACTGTTTGTTTG 334917 36 97.2 30 .......................G............ CGTTAGGTGGAAATGCTCCTCTTGTTTTTG 334983 36 100.0 31 .................................... CAACGTTGGTATTTTCTTCCTTATCAGCAGA 335050 36 100.0 30 .................................... CTGTGCCGATTTTTGCGCTTGCTTGTTCGA 335116 36 100.0 30 .................................... GAAAATATCAATCAACTGTCGTCTTATGTT 335182 36 100.0 30 .................................... GAAGAGATCGCGGCCGACTTGATGTTGACT 335248 36 100.0 30 .................................... TTCTTTAAAATCTCAAAATCCAGCGTATCT 335314 36 97.2 30 ..............C..................... AAATCAGCCGGGGATCGCTTATACCATGGA 335380 36 100.0 31 .................................... TCACGTCTGGAACAAAACGCCAAACCGTTCG 335447 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.4 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TCTCTAAAAATCTAACAAGATTTTCACATAAGTGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATAGCTATGTTTCTGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGGAAAAGCAAAATTTGACGACACCGTTCGGTCGCCTCCCCCCAACACCAAAAAGGTGGCGCTCCGGATAGCTCGGTGTCCAAGGAAAATATAATGGGATTGAAAAGTAAAATCAATAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAACAAGATTTTGCTACCGTTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAATTTTTGATTTTTTTTGACGTGTCTTCCACGTTTTCCCTAAAAATCTGACTATATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAAATATCGAACTTTCATCGTTCGGGCAAGGTTGTTACGATCTTCCTAAAACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTAGAAAGACCTCAAGCAATTTTGTGAACCGCTGTTTCGATTTTTTAGGAAAGCTTTCGGTTGATAATATACTGGTGAATGCGTCGTGCTACTTAACAAGAAGCCTCCTTTGATAAAGCGGACTTTAAGACAGCGTGATAAACTGTAAGACAGCGAGTTAAACCGGTTTGGCACATCCGGTTTATTTCTGCCAATTTTTAAGCGTGGCTAAAGCCGAACACGCCTGCCCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 338272-338971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFON010000002.1 Bartonella sp. W8097 NODE_2_length_531973_cov_239.451334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 338272 36 91.7 30 A.G...................C............. AAAGCTTAGCAAACCCGGCCGATTACCATT C,C [338275,338278] 338340 36 100.0 30 .................................... CTTCTTCCGCCGTTTTAGCATTTTCAATGG 338406 36 100.0 30 .................................... TCCAAGCGAAAATCAATCACATCCGGAACA 338472 36 97.2 31 ..............C..................... TAAAGCGCGCGATGTCGTAACTATTGCGAGG 338539 36 100.0 30 .................................... ACGAACCGAAAATACCAATCGGATGAAGGC 338605 36 100.0 30 .................................... GCTACAGAGAAAATCAGTACGACGCTGTCA 338671 36 97.2 30 ..........................T......... GGTAAAAATGGGCAACGTGGCCGCATCCTT 338737 36 100.0 30 .................................... GCGTAACGGATAATTGTCGTAGGTTGTTTA 338803 36 100.0 30 .................................... ATCCAACGGCGTGACTCCACCAATTATTAT 338869 36 100.0 31 .................................... AATTGCGATTGATTGTATTGACGCCATGGCA 338936 36 91.7 0 ...............................G.C.G | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ACACAAATGTAGACACACTACGCCTTTGGCCGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACCAGCTTTAAAAAACCGGAAAGCTTTTGGTGAATTAACCGGCAATCACGGCAAAAACCGGATGCATTTGACAAACAACCATTTTTGTCGGGCAAACAGCAATGAACTGGAAAAACTCTGATGCGTTTTAAAAAACGCGGCCCGAGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAATGGTGAACGGAATTTTCCAAAAAAACAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATGTTTGTTTAACAAATAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGA # Right flank : GCACAATCCAAAATCATCCTGTCAGGCAACCACTAGCCGCGCATTGACAACACGTCAGATGGTATTTAGCGACGCGTGTTTTTCGTGCCTTTGGAAATCCAAGCCCCAAAAAATGAAAACGTTGGCCATACTTTGCCAAACAACAACACGCAGCGATTTTGGAAAGTAAAAAGGGCACGACTATTTGTAAAGGCATTCGCGTCAAGTCGGAGTTTGTCCAACCCGCAGGCTGTGAAGCGAACACATGAAGAGAGTAAGTTCAGTATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 339735-340365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFON010000002.1 Bartonella sp. W8097 NODE_2_length_531973_cov_239.451334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 339735 36 97.2 29 ................G................... CGGCCGATGAAGTGCGGGAAAGCGTGGAA 339800 36 100.0 30 .................................... TAGCACCGCCAGTGAGCATGAAATTGTTCC 339866 36 97.2 30 ..............C..................... GCTTCTTGAATTTGATCTAATTGGTTTATT 339932 36 100.0 30 .................................... CAAGGGCGATAAGTATGTTGTCCGCTTCAA 339998 36 97.2 30 ..............A..................... CAGCCCATGAAATTTTCAACGTTTCGGATA 340064 36 100.0 30 .................................... GCATTGCCGGCTCTTTGACGTGTTGTCTTG 340130 36 100.0 30 .................................... TCCGGCAGCGAAAAAATAGAGTTAGCAATG 340196 36 100.0 30 .................................... CGTGATCTCTTGCAGCCTTGGGTCATTCGT 340262 36 100.0 32 .................................... CGACCTTTTGAATATCGAATTCAGAGGCGTTG 340330 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 10 36 99.2 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGATGCGATGGTTCGTTGCCTCGCCCGGTGTGACAAATTCTAGATTGTCAGGACGGATGGAAGTATCAAGTAGATTAGTCTGATAATTCTGCCGTGGTTCAGGATTGATGGGGTGCTCGGTGCGCCGTCTTATCACGTGCCCAAGCTTTCCTATTGCAGCGAAGCAGCACAGTATAAAGCCAACCAGAAGCCATATGCTCACTATTACATCCATTTTGTTCCTCCCCCTGCAATGCTACACCGTTTAAACATTTACACACAATAGC # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGATATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGAACTGTTTTCCAAAGAAAAAATTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //