Array 1 19941-18441 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAFH01000030.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 19940 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 19874 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 19808 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 19742 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 19676 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 19610 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 19544 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 19466 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 19400 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 19334 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 19268 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 19202 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 19136 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 19070 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 19004 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 18938 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 18872 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 18806 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 18740 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 18674 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 18608 36 100.0 30 .................................... GTTGCACTATTATTCATTGCATCATCATTA 18542 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 18476 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //