Array 1 643066-644685 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822032.1 Streptococcus thermophilus isolate STH_CIRM_1050 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 643066 36 100.0 30 .................................... GATTTTAATATCCTTTGTAATCTCGTGTTC 643132 36 100.0 30 .................................... ACCAAAGTCAGCTTTAAAACGAAAATCCGA 643198 36 100.0 30 .................................... CGTCCAACAAATTCAAATTCGGATAAACAG 643264 36 100.0 30 .................................... TATTTTCTTTTGGTCTATCTATATTTTTGA 643330 36 100.0 30 .................................... GGGACGATATAGCGGCATTTGGGCAAGCAG 643396 36 100.0 30 .................................... ATCTCGCTCTTTGTGGATGGCTCTCCAACG 643462 36 100.0 30 .................................... GAGACAGATGCCAGCTATCATCGTCTTCCC 643528 36 100.0 30 .................................... ATGGCAGACAGATATTAGAGGTAACCGAGC 643594 36 100.0 30 .................................... CAAGTTTAAACGGTATAAAAGCGGCGGCAG 643660 36 100.0 30 .................................... TAATTCAAGCTGACTAATACCTTTACTGGC 643726 36 100.0 30 .................................... AATGAAAAAAGACTGGGATGCATCTCTTGA 643792 36 100.0 30 .................................... TTATCCCTAAATGCGACCACGTGGTCGTAT 643858 36 100.0 30 .................................... ATGGCAGACAGATATTAGAGGTAACCGAGC 643924 36 100.0 30 .................................... CAGAGTTGGAAGTTATCAATCCGAACACAC 643990 36 100.0 30 .................................... CAGGCGGGCTACGTACTATAGAGGTATCTA 644056 36 100.0 30 .................................... TTAAAAACAATATCATCAATACAACTTTTA 644122 36 100.0 30 .................................... TGCTATTAAAGTAATCATAATTACCAACAA 644188 36 100.0 30 .................................... ATTGAAATCTTTTAGCACAAACACTGTATA 644254 36 100.0 30 .................................... AACATTTCCAACTTAGCTCGTCTGGTGTTA 644320 36 100.0 30 .................................... TGGGCAGTAATTCCATGCTTATTTATTTTA 644386 36 100.0 30 .................................... CAGTAACCTCAACAAAAAGCGAAAACTTTT 644452 36 100.0 30 .................................... AAATTCGGTATTAAAGGTAAATCAAAAGAG 644518 36 100.0 30 .................................... AGATATCAGTAGTGATGATTTGCCGTTCTA 644584 36 100.0 30 .................................... TTAAAAGAATAAGGTTTGCGTCTTCTACGT 644650 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTATTTTAGAGGAATCATATGATAGTTTTTATAAGAAAATTTGTTGGCTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTATTTCCAAGTGATCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATATTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAATGAGAGAAGGTTTTAAGATGTCCTTAGAGACTGTGACGCCTTATTTATTAACAAAAATGACGAGACAACCTAGTTTCTCAATTAATGATTCAGTAATTTTGAATATTCTAAATTATTTGTTTCACTTTAACTACCGTATAAGATATTCACAAACTCCTGATGACGAGCTATTACATAAATTTTTAGAAAGTAAGAATTGACAAGTACGGTTATTGATTTTATAATCACTATGTGAGTATGAAAACGTCAAAAATTTATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGTCTAGTTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 867524-867851 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822032.1 Streptococcus thermophilus isolate STH_CIRM_1050 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 867524 36 100.0 37 .................................... CAAGACCAAGTTTAGCCATGTTTGGCACATTCAAACC 867597 36 100.0 38 .................................... GCGTGCTTCGTATTTGCGTTCATTTTCTTCCCATGATG 867671 36 100.0 37 .................................... AAACTAGTTTTCATCAACTATGAAGGTTTCAAGTCCG 867744 36 100.0 36 .................................... TGTCCGCTGGATATTTATCGCTTTAGTAATTTTCAT 867816 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 100.0 37 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATTGAGGGTTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCATAAGATATGGG # Right flank : CTGATGATGCAAAAAGAAGTAGCGGACCGTATCTCAGCAGAACCAAATACCAAAGCTTACGGTTCACTTTCAATTGCGGTGCAATACTACATGACAGCAAAAATTGCTTTCATCGTGCCACGTACAGTCTTTGTGCCAGCGCCGAACGTTGATTCAGCCATCCTCAAGATGACCCGCCGTGAACAACCACTTGTTCAAGTTAAAGACGAAGATTTCTTCTTCCGCATTGCTAAAATCAGTTTTGTTCACCGTCGTAAAACCCTTTGGAACAACTTGACAAGTCACTTCGGGAAGTCAGAAGAGGTCAAGACCAAATTAGAAAAGGCTCTGGAAGCAGCTGGTATCAAGCCGTCCATTCGTGGAGAAGCTTTATCTATTGCCGATTTTGCAAGATTGGCGGATGCCTTAAAAGAAGTCGGATTATAATGAAGAGACCCCAGCCATTTATTGTGGTTGGGGTTTAAAAATCTTTTAATAGCTTGTCTTTGTAATAATTAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 868825-869005 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822032.1 Streptococcus thermophilus isolate STH_CIRM_1050 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 868825 36 100.0 37 .................................... AAACTAGTTTTCATCAACTATGAAGGTTTCAAGTCCG 868898 36 100.0 36 .................................... TGTCCGCTGGATATTTATCGCTTTAGTAATTTTCAT 868970 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : ATAGCTTGTCTTTGTAATAATTAAAGAAAGTTTTTTTGCCGATAGTGCTGATTGTTTTGCCTTGTAAACCATATTTCAATTTGGAGCTATCTTGTTTATCAACGGTGGCTAGTGCTGTCACCTCAAAGACATTTCCTTCTTTGGTTTGTGTGGCAGAACTTGCAATTTTACTGATTTTGCCAGTGATAACAATGGCGTGATTGCTAATTTTTTCAAGGGTTAGGCGAACAGTCTGTCCTTTTTTCAATTGACTAACATGAGTGGAGTCAACGTAATAGCGGATAGCGACTTGCTGTGTTTTGGCAATATCTGGGTAAATCTCTGCAATCTGACTGCCTTGCGGCAAGAGCGTTTGCCCTTCAAATTCATCAGAAACATGTAAAATGCCACTTTGACTAGCTTTTAAAACGGTGTCAGCTTTGGAGAGATTTGTCTGGTCAAGCTGCGAGAGGGGACGGAAACGCGTGCTTCGTATTTGCGTTCATTTTCTTCCCATGATG # Right flank : CTGATGATGCAAAAAGAAGTAGCGGACCGTATCTCAGCAGAACCAAATACCAAAGCTTACGGTTCACTTTCAATTGCGGTGCAATACTACATGACAGCAAAAATTGCTTTCATCGTGCCACGTACAGTCTTTGTGCCAGCGCCGAACGTTGATTCAGCCATCCTCAAGATGACCCGCCGTGAACAACCACTTGTTCAAGTTAAAGACGAAGATTTCTTCTTCCGCATTGCTAAAATCAGTTTTGTTCACCGTCGTAAAACCCTTTGGAACAACTTGACAAGTCACTTCGGGAAGTCAGAAGAGGTCAAGACCAAATTAGAAAAGGCTCTGGAAGCAGCTGGTATCAAGCCGTCCATTCGTGGAGAAGCTTTATCTATTGCCGATTTTGCAAGATTGGCGGATGCCTTAAAAGAAGTCGGATTATAATGAAGAGACCCCAGCCATTTATTGTGGTTGGGGTTTAAAAATCTTTTAATAGCTTGTCTTTGTAATAATTAAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 966564-965742 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822032.1 Streptococcus thermophilus isolate STH_CIRM_1050 chromosome STHERMO Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 966563 28 100.0 34 ............................ CTATACTATTAATACTTATGTAGGACGAATTTCA 966501 28 100.0 33 ............................ TGGATAAGCTATTACATCATGTTCAGTATATAT 966440 28 100.0 33 ............................ TGGCTAAAAAATTCAGCCCTAACTCTGATAAGT 966379 28 100.0 33 ............................ CGAAATCTTGATAGGCTTTCACCCACTGATTGA 966318 28 100.0 33 ............................ CGGTAAGAAGGCTAAAAAACCAGTATCTTCACT 966257 28 100.0 33 ............................ TGAGTTTCTCATATTCCTCTTTTTCTGCTAATA 966196 28 100.0 33 ............................ CTTCTTCTGAAGCTACTTCTTTATTATCTACCC 966135 28 100.0 33 ............................ TATTCTTCAGATTTTGCACACTGATATTAAGTA 966074 28 100.0 33 ............................ CAAGAGAGCCATACTGGTCCGAATTGTCCAAAC 966013 28 100.0 33 ............................ CAAGAGAGCCATACTGGTCCGAATTGTCCAAAC 965952 28 100.0 33 ............................ CGAGAATGTCAAAGATTCGTTCACGTGGACACC 965891 28 100.0 33 ............................ CAACGTTGGCAACACAATTTCAAACTATTTAAA 965830 28 100.0 33 ............................ TGCTTCTGTATCAGTTGCTACCACATCGAAGCG 965769 28 92.9 0 .G........................T. | ========== ====== ====== ====== ============================ ================================== ================== 14 28 99.5 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCAGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATTGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTTAATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACCTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTCTCTTTATATGCCCACCAAAAAAAGCCAGTGGCTCTTTTTAAATATCATCTTAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATTATTCAGTTCTTTATCTTTGCTAACCTTATCAGCCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATATCGCTTTATCCGAAGTTTGGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //