Array 1 15005-14070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKQ010000050.1 Escherichia coli strain DJXMCRW1020 W10_FDSW210082177-1r_1.clean_(paired)_contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15004 20 69.0 32 ---------.................... GGGTTCTATTTCCTCGGGATTTGCCGACACGC 14952 29 100.0 32 ............................. GTCAACGCTGGTCAGGCGTGGTACTTCCTCCG 14891 29 100.0 32 ............................. GCTGCCGCGCTTTCGGTGTGGGAGCAGTATGA 14830 29 100.0 32 ............................. AAACTCCGTGGTGTAGTGCGTTTGTTGGTGCG 14769 29 100.0 32 ............................. TTGGTATTAACGGGAATGTAGTCACTCCAGGA 14708 29 100.0 32 ............................. GCGATCGTATTTTCCGCTACGTCGCTCAAATG 14647 29 100.0 32 ............................. TCGTTGATGGTGTGATGAGTGTACAAAAAAAA 14586 29 100.0 32 ............................. ACGACTGAATCCGGCGAGGCTATCAACTGGCC 14525 29 100.0 32 ............................. CCGCACACGTCGAGCTGGTGGGGATTAATGCT 14464 29 100.0 32 ............................. CAGTAAACGTTCGCGCGTTCTCGCGCTCACGA 14403 29 96.6 32 ............................C TCTGTGTATTCGCTACCAGCCAGCACCGGTAC 14342 29 100.0 32 ............................. CAGGGTAACTGGCTGCTCCTCAACCATTCCGC 14281 29 96.6 32 ........C.................... GGGTTTTAGCGACCGGACCAGAGTACGCAACA 14220 29 96.6 32 ........C.................... TTGCGCCTTAAGTTCCTTAACTTCCTCTGTAT 14159 29 96.6 32 ........C.................... GGAGTGATGAATTGGAAGTAACGGATAACCGC 14098 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.2 32 GTGTTCCCTGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAGTTCCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58-391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKQ010000051.1 Escherichia coli strain DJXMCRW1020 W10_FDSW210082177-1r_1.clean_(paired)_contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58 29 100.0 32 ............................. GTGACCATAAGGGCATTTCATACTGCCTTGCT 119 29 100.0 32 ............................. GTGAACGTGACAACGCCCGCGACAGAAACGTC 180 29 100.0 32 ............................. GGAAGAAGCGGTAAAGCGGGTTCCAGTTCAGC 241 29 100.0 32 ............................. AAATTAATTTCGAAACGGGCGTTGATGGTGAA 302 29 100.0 32 ............................. GCTGGCGCACCTTACGCAAAAATAGACGTAAA 363 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCTGCGCCAGCGGGGATAAACCG # Left flank : GTTGGTAGATTGTTGTTGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGTG # Right flank : CCAGGGAGCGAAGCTGTGGCCATGCTGAAAGGGTGTTCCCTGCGCCAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //