Array 1 89914-89153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOVX010000014.1 Escherichia coli strain JS80-1 NODE_14_length_90042_cov_67.829072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89913 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 89852 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 89791 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 89730 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 89669 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 89608 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 89547 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 89486 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 89425 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 89364 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 89303 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 89242 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89181 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1269-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOVX010000017.1 Escherichia coli strain JS80-1 NODE_17_length_84402_cov_66.710341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1268 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 1207 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 1146 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 1085 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 1024 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 963 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 902 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 841 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 780 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 719 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 658 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 597 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 536 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 475 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 413 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 352 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 291 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 230 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //