Array 1 95877-95195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIG01000013.1 Enterococcus hirae strain INF E1 E.hirae_INFE1_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 95876 36 100.0 30 .................................... GATGGGGACTTCTCTCAATGCGTGGGGATA 95810 36 100.0 30 .................................... GTTTGCCTCTAAACTATCTCTGAAAGAGTT 95744 36 100.0 30 .................................... ACAACGGACGAATTTGTTTACATTACGTCA 95678 36 100.0 30 .................................... AGCGACCAGGATGATTTAGGCAATGTGGTA 95612 36 100.0 30 .................................... CGACACACCCGACCAAAATAAACCACTCGA 95546 36 100.0 30 .................................... ATGAACGCTAGAAAAGAAGAGTTCGAGAAG 95480 36 100.0 30 .................................... AATACTTTAACTCAGTAGCTAAGATTCATG 95414 36 100.0 30 .................................... GAGAAATAGCATGAAAACGAATTTTGAACG 95348 36 94.4 83 ..........................T........T GTAGAAGCGTTGTGCTTTACTCGATCGCTGTTTTAGTTTTGTGTTATTTTGAGTGCTGGCCTCATCAACTATGATAAGAGGTA 95229 35 77.8 0 .C.......T................AA.G-..G.T | ========== ====== ====== ====== ==================================== =================================================================================== ================== 10 36 97.2 36 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : TAAAATCAAGGATTGATCAATTAACTACCAGGGTTCAGGAATGGATTAGTGAGGAACTCTTAGAACATGAATTAGATTTAGTTTGTGAAGAAATGAGTATGGTTGAGCTATTCAAAGCATTAAAAATAAGAATTACGACGCAACCAGAATCAATTTTTCAAAAAATAATGGAGATTTTACAGATTTATAAGTATCTAGTGAAAAAGAAATGCTTGGTTTTTATCAATGTTGGAGCGTACTTAACAACCACAGAAATGGCTGAACTACAGGAATATATTTCTTTGTGTCATATGCCTGTCCTTTTTATCGAACCACGAAAAATAAAAGGATTGAAGCAAACTGTTTTAGATCAAGACTATTTTTTGTGTGTAGAAATGTGGTAAAATAAGAACAATCAAAATAACAAAAAAACAGCATGAATGAGCATTCAAGACGAAAGTTTTGCTATGGACGAGTAGCGCGATTACGAGATCTTGTGAGAAAAAAATTTTTTCTGCGAG # Right flank : GCCTACTTTATCATGAAAAGTAGGCACTTTTTTTACTTATATATAGGAAAGTGTCTTCAGTTGTTGAATCTGCTAAGTTTTGATCATTGAAAGGGGGAATCGTGCCTTTTAAAAATGAATGGGTATGTTTACGGAACAGGACACAATTGTTCAGTCTTTTCAACATTGAAACGAATTCATTTTCTCAAAGAAAAGATGAGTTGCTAATTTCGTGCTTTTTCTCTATCATCAAACAGTAGGCATTTGTTCGTGAACTAAAATGAATGTGAGAGGGGACAGTGAGATGTTTGATACAAATTTGATAACTTATTTGGACTGGTTGATCGCAATTTTGAATATTGCTTCAATCATTATTTTGCTGGTAGGGATTTTTTTAGTCTTAAAAAATCTTTTTGACTGGCACCCACTGAAAAAAGACTACGAACAGCGTAATTTCCGAAATGCGGAAGTACGCAAATTATTGGCTAGTTATATTTTGCTGAGTCTAGAGGTGCTAGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 81257-81556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIG01000002.1 Enterococcus hirae strain INF E1 E.hirae_INFE1_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 81257 36 100.0 30 .................................... ACCAGTCGTGGGAGGTGTGTCGGGAGTAGA 81323 36 100.0 30 .................................... TTACTTCGGATTGCTTGCAAAAGGGAATTT 81389 36 100.0 30 .................................... TATTGATGAAAACGGAATCTTTAAATTTAA 81455 36 100.0 30 .................................... TTGAGTTATACTGTTTTAAATTGTGAAAGA 81521 36 86.1 0 ..........................T...TG..CT | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : ATCAAATCGAAGGACGGATTTTTGAAGGTCAAAAAATGGTTGTGATCGAAGATTTGATCTCGACAGGCCAAAGCGTTTTAGAAGCAACGGAAGCAGCCAAAAGAGAAGGCGCTAATGTATTAGGCGTAGCGGCGATCTTTACCTATGAACTACCAGCAGGTGAAGAAAATTTTGCCAAAGCAGAGTTACCACTATTTACTCTCACGAATTATTCTGTCTTAATCGAAACAGCGTTAGCCGAAAAATATATTGATGAAGCGGAATTAGCCTTGTTAAAAGAATGGAAAAAGAATCCAGCGGACTGGTTAAAACAGTAACGAAGAAAACGAAGATGGAACAAAAACAAAAGACTCAAAAAAGGGCTTTCGTTGAACAAAATCCATGGTATACTAGGATCAAACAAAACAACTGAATGAAACAAAGGAAGCATCCAAGACGAAAGTTTTGCTATGGACGAGTAGCGCGATTACGGAATTTCGTAAGAAAAAAATTTCTGCGAG # Right flank : TAATAGTTGCTGTGCTTCGCTTGTCGTTTTTAAGGCGAGGAGCTTACACAGAGTTGGTTTTGAATCTTATGATTATTTTGATGGAAACTAGAGTTGTTTTTCTGGTTTCTATTTTTTTATAGTAAAATTGCGTGATTCTCAGTAAAAAGATTAATTTTTCGTTGATTTACAAACGGGATGTTTGCGAAAGATAGTTATTTAATGATAAAATCATCGGAAAAGTAAAGGGGAGGCTATTTTATGGGATTGAATGAATTTATTTTAGGTTTGAATAATTTGGAAAAAATTACACGAGCGCCAGGGTTCTTTAAATTTACTGAACATACGGTAGCCGCTCATTCTTATCGAGTGGCTTCGATTGCTCAAGTCTTAGGTGACATTGAAGAGGTTCATGGTCAAGCAATCGATTGGAAATTACTTTATGAAAAAGCGTTAAATCACGATTACACAGAACGTTTTATCGGGGATATCAAAACACCGGTCAAGTATGCAAATAAAGA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //