Array 1 79738-82758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMC010000009.1 Bifidobacterium pseudocatenulatum strain MSK.13.8 NODE_9_length_86714_cov_469.184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 79738 29 100.0 32 ............................. ACAGCGACTTACGAAGTAACTGCCACCCGTGG 79799 29 100.0 32 ............................. GATCGTTCGCACAACCATCGTCACCATGCTTC 79860 29 100.0 32 ............................. GGACGCCCGTGACATGCTGCGCCAGATTCGCG 79921 29 100.0 32 ............................. GGACGGATTTCCCGATGCATATCCATGCCACG 79982 29 100.0 32 ............................. CACTGGGGTATCTACGGCGTGTCGCCGTTCAC 80043 29 100.0 32 ............................. CGATACAGACTACGCCGAAACGTTGAAACAAC 80104 29 100.0 32 ............................. TGCAGGATACGCGTCGCGTCACCTGCGTCTCC 80165 29 100.0 32 ............................. AATTCAATTTACGCAAAAGATACCGGAATCTA 80226 29 100.0 32 ............................. AATCAGATCGTTTGGCCGGGACAATATTGTCA 80287 29 100.0 32 ............................. ACTTCGTAACGTCCGCGACTCATGTAGGACGG 80348 29 100.0 32 ............................. TACGGGGAGTGTCAAAATCGTAGTCGTTCGTG 80409 29 100.0 32 ............................. GAAGCGCTTGCGCTCGGCCTTCGCCCTTGCGC 80470 29 96.6 32 ............................T CCATAGTCGGCGAGGCGCTGCTTCCCGTGCTG 80531 29 96.6 32 ............................T CCGCGTTCGCGACGACGAAATAGCGTCCGTAT 80592 29 100.0 32 ............................. TGTACGTACGTAGCTCGACATGCCCCGAAGAG 80653 29 100.0 32 ............................. TGTTACATTGGCGGCACGGCGACACCGGCTGT 80714 29 100.0 32 ............................. GCCCAAGTGCAGCAGACTCAAACCGTACCCCC 80775 29 100.0 32 ............................. ACCGATATCTTGACGCTCTCGCGCCCCACATC 80836 29 100.0 32 ............................. CGGCGATGTGCCGCTCTCCCCATGACGGGACG 80897 29 100.0 32 ............................. CCTTCAACACGACCAACTCCACCAGCTCATTA 80958 29 100.0 32 ............................. GTCAAGTTCACCGGCAGTGGACAGCAGAACTA 81019 29 100.0 32 ............................. TTACATTGCATGCCGAAACCAGCGTCTGCTGG 81080 29 100.0 32 ............................. GAACGGAGTTCGGCCGGCACGGCGATGCCGAT 81141 29 100.0 32 ............................. CGTTTCCGCAGCGTTGTCTGTGCCGGTTGTCG 81202 29 100.0 33 ............................. GACAAGGTGGTCTACATGTTCGCCACCAAGCTG 81264 29 100.0 32 ............................. CCATGGGCTCAAGCTGCCGGTCGACTACGAGT 81325 29 100.0 32 ............................. TTGACGCCGACTTCGTGGCGGACGTCACGGAC 81386 29 100.0 32 ............................. AGGACAGAAAACACAACAAAGCGACAACGCCG 81447 29 100.0 32 ............................. TGGAGACACTATTGCAGAAGCGGTAGCCGAAG 81508 29 100.0 32 ............................. TGCTTAACATTTTGCGCGAGTACGATCAGCGC 81569 29 100.0 32 ............................. CTTTTCACCTTTTTTGACCCCAACGTCGGCGG 81630 29 100.0 33 ............................. CGCCGTGGAATCCTATTTGCAGTGGGCTCTGGA 81692 29 100.0 34 ............................. GGGGGGGGGGGTAAGGGATTCCTGGGACAGGAAG 81755 29 100.0 32 ............................. GTGGTCACGATCTGGTCAACGCATGGAAGGTT 81816 29 100.0 31 ............................. CCCTGGAGCGTCGGAACTTCCACCCTCGCAC 81876 29 100.0 32 ............................. TGGGAGGTGGCACCCTCAAGCATGTACTTGAT 81937 29 100.0 32 ............................. ACACGTTTTAAACTGTGCAACGTCCCGTGGGA 81998 29 96.6 32 ............................A CCTCAAGCACCTGCCCAACGACCTCAAAATCA 82059 29 100.0 33 ............................. GTGCCTATCAGTTTCGCCCGTTCCAATATGGTG 82121 29 100.0 32 ............................. GTCACCAAGATCGACAAGAAGATCAAGAGCGT 82182 29 100.0 32 ............................. TCGCCGCTCACGTCGCGGTCGTTGTCGCTCTT 82243 29 100.0 32 ............................. ATCAGTCGGGGGGTTATCTTCGGGTTTTCTAT 82304 29 100.0 32 ............................. CGGAGCCGGAGCAGGAGCCGGAGTGCCGGAAG 82365 29 100.0 32 ............................. GCGGGTAGTTGCAAGCATCAGTGTAATCAGGC 82426 29 100.0 32 ............................. GGCATGCCGATGAGCCACCATGCGATCCAGCA 82487 29 100.0 32 ............................. AAGGATACGCTGCCCATGATCGTCGGCACGAA 82548 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 82730 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 48 29 99.5 35 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGCGTCAAAAACACCCCCCCCCTTAAGTGGCTTTTCTCGAAAGGCATGTGCTATATGTAAGCGAGAAACCTCCGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCACGGTTCAGCTCAGATGAACTGGGTGTATGTCCATGCATTTCG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 266856-267130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMC010000001.1 Bifidobacterium pseudocatenulatum strain MSK.13.8 NODE_1_length_669933_cov_499.373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================== ================== 266856 27 100.0 63 ........................... ATCATAATCACGATCGTCACGATCGGAACGACGATCATCGCGATCGTAGTCACGGTCATCGCG 266946 27 100.0 30 ........................... ATCACGATCGTAATCGCGGTCATCGTCACG Deletion [267003] 267003 27 96.3 72 ............G.............. ATCATAATCACGATCGTCACGATCGGAACGACGATCATCACGACGGCCACGGCTGCCGCGACGGTCATCGCG 267102 27 77.8 0 .........CTC...G.........GG | G,G [267124,267126] ========== ====== ====== ====== =========================== ======================================================================== ================== 4 27 93.5 55 ATCGGAACGACGACGACGCGGACGATC # Left flank : TTGAGCTGCACGTCGATCTGCGCCCAACCGTTCTTCACACGATTACGTAGCGTGACCAGCCCGTTGTAGGCGCTGACGGCCCAAAGCACAATAAGTACAACGATGACGGCAATGATAATGCCAACGACCATGACGACTCCTTCGTTAATGGCTCTTCACACCATTCTTGCATGCGCCCAGGTACGTTATGACAAAACTCATGCCCCCGTGTCTCATTTTCATGCAATCTGCATGGAAACGCAAAAGTGCCCCGTACCTTCCGGTACAGGGCACTTCAGTCAGTCAGCTATGCTGCGAGGGATCCTTTTGAGGCGTCAGTCCTCAAAAGGATCAAAGTCGCGGCGGACGCGGCGGCGAGGACGCTCGGAACGCTCTTCGCGATCGGCACGGTACTCGTCGTAGTTCTCGTCGGCTGCGTAACGCGGATTGCGGTCGTCGCGGCGGCTGCTGCGACGACGGTCGGAACGACGATCATCACGATCGTAGTCACGGTCATCGCG # Right flank : GATTCCTGATCTTCGAAGCCTGGAATGGCCAGGGAGATCTTGCCGCGATCGTCAACGCCCTGCACGACTACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACGGCGTCGATACGCTCGCCGTTGGCCAGATTACGGATCTGGGAGATGTGCAACAGGCCGTCGGTGCCCGGGGTCAGGTTCACGAAGGCACCGAAGGAGGTGGTCTTCACAACCTTGCCGTTGTAGGTTTCGCCGGCTTCAGGAACGTGCGGGTTGGCGATCTGGTCGATGATCTGCTTGGCCTTTTCAGCGCCGTCGCCACCTTCGGAGGAGATGAACACGGTACCGTCATCTTCGATGGCGATCTCCGCACCGGTCTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGACCGATGACTTCGCCGATCTTGTCGACCGGAACGGTGGTGGTGATGATGCGCGGTGCGTACGGGCTCATCTCGGCCGGACCATCGATGCACTCGTTGATGAC # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-1.95, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAACGACGACGACGCGGACGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //