Array 1 488-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJE01000016.1 Moraxella catarrhalis strain A6 NODE_18_length_41252_cov_45.574274, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 487 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 427 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 367 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 307 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 247 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 187 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 127 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : AACCACAAAAGTAAGGTGGGGATTTACTGCGATCTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61932-61122 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJE01000010.1 Moraxella catarrhalis strain A6 NODE_10_length_61970_cov_44.206167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61931 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 61871 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 61811 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 61751 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 61691 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 61631 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 61571 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 61511 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 61451 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 61391 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 61330 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 61270 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 61209 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 61149 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAGAAATTACACTTGTAATCGTCGAAATGCTTCTTGTG # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //