Array 1 112150-111719 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFF01000008.1 Porphyromonas gingivalis strain A7A1_28 isolate A7A1_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112149 36 100.0 29 .................................... AAAAGCAAAAACCAACCTACTTAATACCA 112084 36 100.0 30 .................................... AAGAAGAAAAAGTAAGTAACCCTTTCACAA 112018 36 100.0 30 .................................... TTATATTCGTGTAATTCTTTCTACTGATAG 111952 36 100.0 30 .................................... TACACTTCTAAAAGATATAGAGTCTTTATT 111886 36 100.0 30 .................................... CAAGCCCTGTATAGAGACGCGGAGCGTTCC 111820 36 100.0 30 .................................... ATAGTTAAGGGAGATTTTCTCACCCCCATA 111754 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGATCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCTATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAAGGAAAGCACTCCCCGACACGAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCGAAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : TACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 56951-56315 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFF01000012.1 Porphyromonas gingivalis strain A7A1_28 isolate A7A1_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 56950 37 100.0 35 ..................................... ATTTTGACGCATTAAATCTTTTAAGATTTGATTAA 56878 37 100.0 37 ..................................... CCATAATGCACACATTATAAGACCGCCTAATTCTTTT 56804 37 100.0 40 ..................................... TTTTCTATTACCCAAGGATTATCTACCTCTTTCATGGAGG 56727 37 100.0 37 ..................................... TTCATAGGTTGAAGAAAATACATTAGGTACTTTCCTA 56653 37 100.0 37 ..................................... TCCATAAAGAGTGATGTTAAGGATGTCACTACTGCCG 56579 37 100.0 41 ..................................... TTTAATAGTAGCACCTTCAAGAATCAACTTTTGAATAACCT 56501 37 100.0 38 ..................................... TTTTTCATATTCATCTCCAGCATTAAATTCAATTTGTT 56426 37 100.0 38 ..................................... CTTATCGTTTTCTAGATTAAATAACCTCTCTATTTCTT 56351 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 99.7 38 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAACGGTGTCTTTCTCTATTTTTCGAAAATCTAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACAGAAAATCAGGTAATCTCATTGTATATCAATGAGATATAATCAGCTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTA # Right flank : ACTGATTACCGAGGGTTAGAACGAATGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCGGGCTTCTTGTGCTCTATGGCATGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAAGCTCCTTTGTATTCACACATTCACACATCTACGAGGATGCCAAACGCACAAGCATGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCGATGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTCTCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCAGAAAACACGCGCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGCAAAGGAAAGTTCGGTCGTTTTCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 110536-104554 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFF01000020.1 Porphyromonas gingivalis strain A7A1_28 isolate A7A1_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================== ================== 110535 30 96.7 38 A............................. AATCGGAACCTGCTGTCGCACGCCTCATACGCCCGAAT 110467 30 100.0 37 .............................. TTTGCGAGGATTCTTTCTTTCAGTTCTGAAAAATTAT 110400 30 100.0 38 .............................. AGGCTTGTTATAATAATAGCGGTTGTATTCTTTCTTAT 110332 30 100.0 36 .............................. CCTGCTCGAAAAGCGGCTGGTTTTCCGTCGCAAGCT 110266 30 100.0 36 .............................. CATTTGCTGTCTTTACCCCGGCCTCCAGATGCCTTA 110200 30 100.0 35 .............................. CTTAAAGAAAGAATCTTGCTGTTTATCTCGCACGT 110135 30 100.0 37 .............................. AATATGGCTTCGGAGCTTGTAAGCCACGTTTTTTCTA 110068 30 100.0 35 .............................. TCTCGCACGTTGGGGTCAGCAAATCCACATTTGAG 110003 30 100.0 35 .............................. AGGGTGTAAATCTTCCCGTCATCCGGGAGTAGACT 109938 30 100.0 36 .............................. GCATCGGGGATCAGGAATACCCCGCATATCAGACGA 109872 30 100.0 37 .............................. GCAACAGGGAAGTGGAAAAAAGCAGACGGCTCCGACT 109805 30 100.0 37 .............................. CGGAAGGAGAAAAAAATAATCCTGTCCGAATTTTTGC 109738 30 100.0 37 .............................. CGAGACCTGTCCGGGCGCGCCGGCGTGGCGCGAGCGT 109671 30 100.0 35 .............................. GCAGCTCCCATCGCATTGTTGAACGAGGTGATTTC 109606 30 100.0 35 .............................. GGCCGAAATCCGCACTCAAACCTGGGCGCATAAAA 109541 30 100.0 36 .............................. CATGATCGCTAAGTGGGATCTGGACAAAACGCTCGT 109475 30 100.0 35 .............................. ATTCTGATCGACAACGGGCACGGCATCAACACGCC 109410 30 100.0 35 .............................. ACATCATCACTTCTTAACTTCGTACCGGTTCCCTT 109345 30 100.0 37 .............................. TCTGAAATAGCATGGAGGGAACCAATAGAGTTTTATC 109278 30 100.0 37 .............................. CTATTCGTGTTCACGTAATAGCAAAGAAGGAGAAGAA 109211 30 100.0 36 .............................. TAGAACCTCTGTCCGACGCAGCTTCAAACTTACTAC 109145 30 100.0 37 .............................. TAGAACAGTACATTCCGAATCTCTTCCGTACTGACTC 109078 30 100.0 39 .............................. TATTTAAGGAGAACTATCGAAGACTGGATTATATTGGGT 109009 30 100.0 35 .............................. AAAGTTGTAATATTGACTCTTGATGCCGAAACTAA 108944 30 100.0 36 .............................. CAACCAGACTTTACTTCTGAAAGCGGAAGTATGTAC 108878 30 100.0 35 .............................. ATCGTCAGCATAGTCGCTACGATCTTTGTTGCTGT 108813 30 100.0 35 .............................. TCTTATTTCAAATTGGGATAAGGTTATGAACTTTC 108748 30 100.0 35 .............................. GCTTGTGCTGTTTTTATAATCTAGTTCTTCAAATG 108683 30 100.0 36 .............................. CTTAAATCCTCTTGGAATTATTCAAACAATAACTCC 108617 30 100.0 35 .............................. TGGGGTAGAGTATTTGCCATAGGTGCTATTGCCTA 108552 30 100.0 37 .............................. TATGAAAACAAGAAAGGACTTCTCAGCCATGAGTTTG 108485 30 100.0 35 .............................. TTGCTTTGCCACTTTTATTAAAGAGAATGGAAGTC 108420 30 100.0 35 .............................. GACCAATACTCGTAGAATTTGGAAACCATATCCCT 108355 30 100.0 37 .............................. TGAGAAGAGAAATCAAATTTAGAGCAAAACCACCAAC 108288 30 100.0 37 .............................. ATATGAATCTAACGGACTTGTTTACCCATTGTCCGAT 108221 30 100.0 34 .............................. GCCGAAGAGAGCTAAAGCGATCGATAAAGAATTT 108157 30 100.0 37 .............................. TTATAATGGCTTACCTCCCCATCTATCTGTTTTTGCA 108090 30 100.0 36 .............................. AGTCATTGATTACACCTCCTTTCCTTTTTGGCCATA 108024 30 100.0 38 .............................. TGTGTATAACAATCGATTCGTGTTCCCGCTTCCCCCAA 107956 30 100.0 37 .............................. AACAATTGGCTATGTTGGAGGGAGATCATGCTTCTAT 107889 30 100.0 38 .............................. TGTTGGGTCACAAGAGCGGAAAAAGGAGTAACACCCAC 107821 30 100.0 37 .............................. CCGCATCAGTAGCTTTGCGTCCGCATATCTCGCAGAA 107754 30 100.0 35 .............................. CAAATCGCTCTTGCTTTGCTCTGCCCCTCTCCCTG 107689 30 100.0 36 .............................. CGTACATGATGCCCTGCTGGAGGCAGGGTTCACGCT 107623 30 100.0 37 .............................. CCACAGACCAGTATTGCGGTATCGCCCCCCGTCGCTC 107556 30 100.0 35 .............................. GGCGCGCTCGATCTTGCTTTCGAAGTCGGCTATTC 107491 30 100.0 36 .............................. CTCACGAAAACAGAAGGAGGTCAGTCATGATACGTA 107425 30 100.0 35 .............................. GGGTTGTAGTTTGTGTTGCCATATTTTCTACTGAT 107360 30 100.0 37 .............................. CCGAGTCGATATACTCGACAAAAACGGGCGCCCGTCC 107293 30 100.0 36 .............................. TCATCACTTGACGTAGTTTCGTGAGAATTTCGTGGG 107227 30 100.0 36 .............................. TTTCTTTTGCGCGCGGAATAGTGGACTTTTGCAGCA 107161 30 100.0 36 .............................. TTGACCGCATCAACGACCACAACCCCGACAACGTCG 107095 30 100.0 35 .............................. CCCCGCGGCCGCGCCCGCCCCTTTGCAGCTGAGCA 107030 30 100.0 36 .............................. ACACCCTCGAGGAGATTAACGCCCTGCGACTGGATA 106964 30 100.0 37 .............................. TACGATATGCGCGACGCTGTAATCAAGAAATTAGAAG 106897 30 100.0 36 .............................. CCGGCGACGAACTCGCCGTCAAGGTGTCTAATAAAG 106831 30 100.0 36 .............................. TTGATCTTTGTTTGCTCGTTCATAATCTTAACATAT 106765 30 100.0 37 .............................. TATGCGCTGATGTTGTGTCGCTTTAATGATGGGAAGT 106698 30 100.0 38 .............................. TGCCCAGAGCTATAACGAAGCTTACAAAAACTCAACTC 106630 30 100.0 35 .............................. TTAATAAAGGGAACGTCATACAAGGCCGTACTAAT 106565 30 100.0 36 .............................. GCGTGAAACGAATGCGGACGAAATTACCGCAAAATT 106499 30 100.0 36 .............................. ACAGCTGCAGAACGCCCTCGCACAGATGCGTATCGA 106433 30 100.0 37 .............................. TTCAGTAACTCAACGAAACGAATGTGATCCAAGGCGA 106366 30 100.0 101 .............................. GCTGAAAAAGTCCACAGCGGCATCGGAGGGCTTTTAACCTTTTTGATCTATGCAATCCCGATTGGCTGAAAAAGTCCACAGCGGCATCGGAGGCCGCCTGT 106235 30 100.0 36 .............................. GAGTTCATTAGTACAAGTGGGACCACTTAAAAAGTA 106169 30 100.0 37 .............................. TGACTAATGATGCTATTTTTACTAAAGGTTGTATTTA 106102 30 100.0 37 .............................. AATAAGTCCTGGAAGAGGGTGTAGGAATTGGAGATGG 106035 30 100.0 35 .............................. GCAAATAATCCTAATTTAGAAGGGAACTTAGAGGT 105970 30 100.0 35 .............................. TTGATGAAAATCTTCATCGTCAAGTATGCGCTGTT 105905 30 100.0 36 .............................. CCACCTGTTCCGCCAGATGGTGAATCTTGGGTACAT 105839 30 100.0 36 .............................. ATATGACTTCCTAGGAGAGGAATCTATAGATAACGA 105773 30 100.0 36 .............................. GCTTCGTCGAGGGATGGAACGAATCCCCCCTACAAC 105707 30 100.0 38 .............................. TTCCAGATACTCGAGCGTGTCAAGCTGTTCACGGAGTT 105639 30 100.0 37 .............................. TGTCGCGTCCAATTGTATTATACAAGGCAATGGCAAT 105572 30 100.0 37 .............................. TTTGACACAAGCCCAATTTCCGCGCGGTAGCGGTGTT 105505 30 100.0 36 .............................. TCGATCCATACTTAAAAAGAATACCCCTGCGGAGGA 105439 30 100.0 36 .............................. TGCGTTTTTGTCCCGGACATAAGCAAGCGAAAGTCC 105373 30 100.0 36 .............................. CGAAGTGGTGGCGCATAAGGGGCTTCGGGATATGCT 105307 30 100.0 36 .............................. GGGCATAAAAGGCACCCTGTATATCGCCTTTACCGA 105241 30 100.0 37 .............................. AAAATAGATATGCTTAAGCGCAGAGCGTCCGAGAAAT 105174 30 100.0 36 .............................. AAAGGGATGTTCGACACTGTAGCAGAAAGAAAGGAT 105108 30 100.0 36 .............................. TCGATCCGCAAAGCAAGTGCTCTGTCTACTCCTCTT 105042 30 100.0 36 .............................. GAAATATGTCGGGCGGTGTTCAGGGCGGTATTCCCA 104976 30 100.0 35 .............................. GAAGACACAAAAAACACGCAAATCAGCGCATCATA 104911 30 100.0 34 .............................. GAGCGCGATGAGACAACAGCGCAAGAAAAAAAAA 104847 30 100.0 36 .............................. ATCGTCCGCTGAGTTCGTTTCCTGTGTCTTGGCTCA 104781 30 100.0 36 .............................. TAGACGACTTCTATAGCGACTGGGATATATTAGACC 104715 30 100.0 36 .............................. ACAGGGAAAACAATCAGAAAAATAAAACGTGAAAAC 104649 30 100.0 36 .............................. TTCTTTTTTGTTTTTGTTTACGCCAGCTTTATCTAT 104583 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================================================================================== ================== 90 30 100.0 37 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TATACAAAATAACTTCCTATTATACAATGAATTAACAAACAAAATACACACCAATTGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATA # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTTAAACCCAAAATTCAGATATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGTATTTGCTCGAGTCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //