Array 1 51152-52337 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABF01000086.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3266_R1 NODE_9_length_178505_cov_0.793342_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51152 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51213 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51274 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51335 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51396 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51457 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51518 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51579 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51640 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51701 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51762 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51823 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51884 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 51945 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 52006 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52067 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52128 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52189 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52250 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52310 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69007-70622 **** Predicted by CRISPRDetect 2.4 *** >NZ_NABF01000086.1 Salmonella enterica subsp. enterica serovar Newport strain R9_3266_R1 NODE_9_length_178505_cov_0.793342_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69007 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69068 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69129 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69190 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69251 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69312 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69373 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69434 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69495 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69556 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69617 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69678 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69739 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCACG 69800 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 69861 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 69922 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 69983 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 70044 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 70105 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 70166 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 70227 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 70288 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 70349 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 70410 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 70471 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 70532 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70593 29 100.0 0 ............................. | A [70620] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //